SNP Links for Gene (Select 693209) - SNP

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Select item 14910274621.

rs1491027462 has merged into rs527397877 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,AAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 14:31014823 (GRCh38)
14:31484029 (GRCh37)
Canonical SPDI:: NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000014.9:31014813:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.125/5 (GENOME_DK)
HGVS:: NC_000014.9:g.31014823_31014830del, NC_000014.9:g.31014827_31014830del, NC_000014.9:g.31014829_31014830del, NC_000014.9:g.31014830del, NC_000014.9:g.31014830dup, NC_000014.9:g.31014829_31014830dup, NC_000014.9:g.31014828_31014830dup, NC_000014.8:g.31484029_31484036del, NC_000014.8:g.31484033_31484036del, NC_000014.8:g.31484035_31484036del, NC_000014.8:g.31484036del, NC_000014.8:g.31484036dup, NC_000014.8:g.31484035_31484036dup, NC_000014.8:g.31484034_31484036dup

Select item 14897843412.

rs1489784341 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:31015819 (GRCh38)
14:31485025 (GRCh37)
Canonical SPDI:: NC_000014.9:31015818:G:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.31015819G>A, NC_000014.8:g.31485025G>A

Select item 14881083353.

rs1488108335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:31015944 (GRCh38)
14:31485150 (GRCh37)
Canonical SPDI:: NC_000014.9:31015943:G:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000014.9:g.31015944G>A, NC_000014.8:g.31485150G>A

Select item 14879741304.

rs1487974130 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:31014972 (GRCh38)
14:31484178 (GRCh37)
Canonical SPDI:: NC_000014.9:31014971:C:T
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000014.9:g.31014972C>T, NC_000014.8:g.31484178C>T

Select item 14878409955.

rs1487840995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:31016358 (GRCh38)
14:31485564 (GRCh37)
Canonical SPDI:: NC_000014.9:31016357:G:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.31016358G>A, NC_000014.8:g.31485564G>A

Select item 14864697176.

rs1486469717 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:31015492 (GRCh38)
14:31484698 (GRCh37)
Canonical SPDI:: NC_000014.9:31015491:C:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.31015492C>A, NC_000014.8:g.31484698C>A

Select item 14858626497.

rs1485862649 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:31014191 (GRCh38)
14:31483397 (GRCh37)
Canonical SPDI:: NC_000014.9:31014190:C:T
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.31014191C>T, NC_000014.8:g.31483397C>T

Select item 14850367448.

rs1485036744 has merged into rs371021241 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 14:31015059 (GRCh38)
14:31484265 (GRCh37)
Canonical SPDI:: NC_000014.9:31015058:CC:C
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000071/1 (ALFA)
-=0.000114/16 (GnomAD)
-=0.00014/37 (TOPMED)
-=0.000312/2 (1000Genomes)
HGVS:: NC_000014.9:g.31015060del, NC_000014.8:g.31484266del

Select item 14833647809.

rs1483364780 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:31014826 (GRCh38)
14:31484032 (GRCh37)
Canonical SPDI:: NC_000014.9:31014825:A:C
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.31014826A>C, NC_000014.8:g.31484032A>C

Select item 147755120910.

rs1477551209 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:31015430 (GRCh38)
14:31484636 (GRCh37)
Canonical SPDI:: NC_000014.9:31015429:T:C
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000014.9:g.31015430T>C, NC_000014.8:g.31484636T>C

Select item 147750977911.

rs1477509779 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:31016005 (GRCh38)
14:31485211 (GRCh37)
Canonical SPDI:: NC_000014.9:31016004:A:T
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000014.9:g.31016005A>T, NC_000014.8:g.31485211A>T

Select item 147617633112.

rs1476176331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:31015945 (GRCh38)
14:31485151 (GRCh37)
Canonical SPDI:: NC_000014.9:31015944:C:G,NC_000014.9:31015944:C:T
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000239/4 (TOMMO)
HGVS:: NC_000014.9:g.31015945C>G, NC_000014.9:g.31015945C>T, NC_000014.8:g.31485151C>G, NC_000014.8:g.31485151C>T

Select item 147587222913.

rs1475872229 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:31015575 (GRCh38)
14:31484781 (GRCh37)
Canonical SPDI:: NC_000014.9:31015574:G:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000014.9:g.31015575G>A, NC_000014.8:g.31484781G>A

Select item 147519503614.

rs1475195036 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:31014839 (GRCh38)
14:31484045 (GRCh37)
Canonical SPDI:: NC_000014.9:31014838:C:G
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.31014839C>G, NC_000014.8:g.31484045C>G

Select item 147276820915.

rs1472768209 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:31014675 (GRCh38)
14:31483881 (GRCh37)
Canonical SPDI:: NC_000014.9:31014674:T:C
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000028/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.31014675T>C, NC_000014.8:g.31483881T>C, NR_030354.1:n.68A>G

Select item 147091631916.

rs1470916319 [Homo sapiens]

Variant type:: INS
Alleles:: ->TACAC [Show Flanks]
Chromosome:: 14:31014652 (GRCh38)
14:31483859 (GRCh37)
Canonical SPDI:: NC_000014.9:31014652::TACAC
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TACAC=0./0 (ALFA)
TACAC=0.000014/2 (GnomAD)
TACAC=0.000019/5 (TOPMED)
HGVS:: NC_000014.9:g.31014652_31014653insTACAC, NC_000014.8:g.31483858_31483859insTACAC, NR_030354.1:n.90_91insGTGTA

Select item 147007659617.

rs1470076596 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:31014862 (GRCh38)
14:31484068 (GRCh37)
Canonical SPDI:: NC_000014.9:31014861:C:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.31014862C>A, NC_000014.8:g.31484068C>A

Select item 146963344618.

rs1469633446 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:31015599 (GRCh38)
14:31484805 (GRCh37)
Canonical SPDI:: NC_000014.9:31015598:C:T
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.31015599C>T, NC_000014.8:g.31484805C>T

Select item 146689877119.

rs1466898771 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:31016668 (GRCh38)
14:31485874 (GRCh37)
Canonical SPDI:: NC_000014.9:31016667:C:G
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.31016668C>G, NC_000014.8:g.31485874C>G

Select item 146613176020.

rs1466131760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:31015561 (GRCh38)
14:31484767 (GRCh37)
Canonical SPDI:: NC_000014.9:31015560:C:A
Gene:: STRN3 (Varview), MIR624 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.31015561C>A, NC_000014.8:g.31484767C>A

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