SNP Links for Nucleotide (Select 134032040) - SNP

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Links from Nucleotide

Items: 1 to 20 of 39

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Select item 14796136271.

rs1479613627 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25099591 (GRCh38)
15:25344738 (GRCh37)
Canonical SPDI:: NC_000015.10:25099590:G:A
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099591G>A, NC_000015.9:g.25344738G>A, NG_002690.1:g.318682G>A, NR_003340.2:n.94G>A

Select item 14601680122.

rs1460168012 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25099572 (GRCh38)
15:25344719 (GRCh37)
Canonical SPDI:: NC_000015.10:25099571:G:A
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25099572G>A, NC_000015.9:g.25344719G>A, NG_002690.1:g.318663G>A, NR_003340.2:n.75G>A

Select item 14440628433.

rs1444062843 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25099555 (GRCh38)
15:25344702 (GRCh37)
Canonical SPDI:: NC_000015.10:25099554:G:C
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25099555G>C, NC_000015.9:g.25344702G>C, NG_002690.1:g.318646G>C, NR_003340.2:n.58G>C

Select item 13780361614.

rs1378036161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25099574 (GRCh38)
15:25344721 (GRCh37)
Canonical SPDI:: NC_000015.10:25099573:C:A
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000015.10:g.25099574C>A, NC_000015.9:g.25344721C>A, NG_002690.1:g.318665C>A, NR_003340.2:n.77C>A

Select item 13227574125.

rs1322757412 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25099580 (GRCh38)
15:25344727 (GRCh37)
Canonical SPDI:: NC_000015.10:25099579:T:C
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25099580T>C, NC_000015.9:g.25344727T>C, NG_002690.1:g.318671T>C, NR_003340.2:n.83T>C

Select item 13112782436.

rs1311278243 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:25099587 (GRCh38)
15:25344734 (GRCh37)
Canonical SPDI:: NC_000015.10:25099586:T:A
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25099587T>A, NC_000015.9:g.25344734T>A, NG_002690.1:g.318678T>A, NR_003340.2:n.90T>A

Select item 12427730137.

rs1242773013 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25099576 (GRCh38)
15:25344723 (GRCh37)
Canonical SPDI:: NC_000015.10:25099575:C:A
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099576C>A, NC_000015.9:g.25344723C>A, NG_002690.1:g.318667C>A, NR_003340.2:n.79C>A

Select item 11606177788.

rs1160617778 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25099540 (GRCh38)
15:25344687 (GRCh37)
Canonical SPDI:: NC_000015.10:25099539:C:A
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099540C>A, NC_000015.9:g.25344687C>A, NG_002690.1:g.318631C>A, NR_003340.2:n.43C>A

Select item 10445440409.

rs1044544040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25099542 (GRCh38)
15:25344689 (GRCh37)
Canonical SPDI:: NC_000015.10:25099541:G:T
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.5/1 (Siberian)
HGVS:: NC_000015.10:g.25099542G>T, NC_000015.9:g.25344689G>T, NG_002690.1:g.318633G>T, NR_003340.2:n.45G>T

Select item 101669562910.

rs1016695629 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:25099532 (GRCh38)
15:25344679 (GRCh37)
Canonical SPDI:: NC_000015.10:25099531:A:C,NC_000015.10:25099531:A:G
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099532A>C, NC_000015.10:g.25099532A>G, NC_000015.9:g.25344679A>C, NC_000015.9:g.25344679A>G, NG_002690.1:g.318623A>C, NG_002690.1:g.318623A>G, NR_003340.2:n.35A>C, NR_003340.2:n.35A>G

Select item 97838384211.

rs978383842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25099588 (GRCh38)
15:25344735 (GRCh37)
Canonical SPDI:: NC_000015.10:25099587:G:A,NC_000015.10:25099587:G:T
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099588G>A, NC_000015.10:g.25099588G>T, NC_000015.9:g.25344735G>A, NC_000015.9:g.25344735G>T, NG_002690.1:g.318679G>A, NG_002690.1:g.318679G>T, NR_003340.2:n.91G>A, NR_003340.2:n.91G>T

Select item 88698657612.

rs886986576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25099507 (GRCh38)
15:25344654 (GRCh37)
Canonical SPDI:: NC_000015.10:25099506:G:A,NC_000015.10:25099506:G:T
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25099507G>A, NC_000015.10:g.25099507G>T, NC_000015.9:g.25344654G>A, NC_000015.9:g.25344654G>T, NG_002690.1:g.318598G>A, NG_002690.1:g.318598G>T, NR_003340.2:n.10G>A, NR_003340.2:n.10G>T

Select item 86638698213.

rs866386982 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25099563 (GRCh38)
15:25344710 (GRCh37)
Canonical SPDI:: NC_000015.10:25099562:C:T
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
HGVS:: NC_000015.10:g.25099563C>T, NC_000015.9:g.25344710C>T, NG_002690.1:g.318654C>T, NR_003340.2:n.66C>T

Select item 78175420314.

rs781754203 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25099561 (GRCh38)
15:25344708 (GRCh37)
Canonical SPDI:: NC_000015.10:25099560:A:G
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000009/1 (ExAC)
G=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25099561A>G, NC_000015.9:g.25344708A>G, NG_002690.1:g.318652A>G, NR_003340.2:n.64A>G

Select item 78165027915.

rs781650279 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25099506 (GRCh38)
15:25344653 (GRCh37)
Canonical SPDI:: NC_000015.10:25099505:T:C
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
C=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25099506T>C, NC_000015.9:g.25344653T>C, NG_002690.1:g.318597T>C, NR_003340.2:n.9T>C

Select item 78014966216.

rs780149662 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25099594 (GRCh38)
15:25344741 (GRCh37)
Canonical SPDI:: NC_000015.10:25099593:C:T
Gene:: SNORD116-26 (Varview), SNORD116-27 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
T=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25099594C>T, NC_000015.9:g.25344741C>T, NG_002690.1:g.318685C>T, NR_003340.2:n.97C>T

Select item 77816052717.

rs778160527 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25099501 (GRCh38)
15:25344648 (GRCh37)
Canonical SPDI:: NC_000015.10:25099500:A:G
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000004/1 (TOPMED)
G=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25099501A>G, NC_000015.9:g.25344648A>G, NG_002690.1:g.318592A>G, NR_003340.2:n.4A>G

Select item 77577272418.

rs775772724 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25099523 (GRCh38)
15:25344670 (GRCh37)
Canonical SPDI:: NC_000015.10:25099522:A:G
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.000004/1 (GnomAD_exomes)
G=0.000009/1 (ExAC)
G=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.25099523A>G, NC_000015.9:g.25344670A>G, NG_002690.1:g.318614A>G, NR_003340.2:n.26A>G

Select item 77427591019.

rs774275910 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25099531 (GRCh38)
15:25344678 (GRCh37)
Canonical SPDI:: NC_000015.10:25099530:C:T
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000009/1 (ExAC)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.25099531C>T, NC_000015.9:g.25344678C>T, NG_002690.1:g.318622C>T, NR_003340.2:n.34C>T

Select item 77303320720.

rs773033207 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25099535 (GRCh38)
15:25344682 (GRCh37)
Canonical SPDI:: NC_000015.10:25099534:G:A
Gene:: SNORD116-26 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000053/6 (ExAC)
A=0.000064/9 (GnomAD)
A=0.000069/16 (GnomAD_exomes)
A=0.000083/22 (TOPMED)
HGVS:: NC_000015.10:g.25099535G>A, NC_000015.9:g.25344682G>A, NG_002690.1:g.318626G>A, NR_003340.2:n.38G>A