SNP Links for Nucleotide (Select 223278417) - SNP

Links from Nucleotide

Items: 1 to 20 of 295

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Select item 14879538721.

rs1487953872 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87397525 (GRCh38)
6:88107243 (GRCh37)
Canonical SPDI:: NC_000006.12:87397524:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.87397525T>C, NC_000006.11:g.88107243T>C, NR_026784.1:n.402T>C

Select item 14856302262.

rs1485630226 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:87399603 (GRCh38)
6:88109321 (GRCh37)
Canonical SPDI:: NC_000006.12:87399602:G:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87399603G>T, NC_000006.11:g.88109321G>T, NM_022084.2:c.*153G>T, NR_026784.1:n.1420G>T

Select item 14839106543.

rs1483910654 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87397935 (GRCh38)
6:88107653 (GRCh37)
Canonical SPDI:: NC_000006.12:87397934:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.87397935A>G, NC_000006.11:g.88107653A>G, NM_022084.2:c.-280A>G, NR_026784.1:n.812A>G

Select item 14822873314.

rs1482287331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:87398247 (GRCh38)
6:88107965 (GRCh37)
Canonical SPDI:: NC_000006.12:87398246:C:A
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87398247C>A, NC_000006.11:g.88107965C>A, NM_022084.2:c.33C>A, NR_026784.1:n.1124C>A, NM_022084.1:c.33C>A

Select item 14788591775.

rs1478859177 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTGACGAGAAATTCAGGTG [Show Flanks]
Chromosome:: 6:87398358 (GRCh38)
6:88108077 (GRCh37)
Canonical SPDI:: NC_000006.12:87398358:GTGCTGACGAGAAATTCAGGTG:GTGCTGACGAGAAATTCAGGTGCTGACGAGAAATTCAGGTG
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant,splice_donor_variant,intron_variant
Validated:: by frequency
MAF:: GTGCTGACGAGAAATTCAG=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87398362_87398380dup, NC_000006.11:g.88108080_88108098dup

Select item 14735591466.

rs1473559146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:87398053 (GRCh38)
6:88107771 (GRCh37)
Canonical SPDI:: NC_000006.12:87398052:A:C
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87398053A>C, NC_000006.11:g.88107771A>C, NM_022084.2:c.-162A>C, NR_026784.1:n.930A>C

Select item 14714779207.

rs1471477920 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:87398165 (GRCh38)
6:88107883 (GRCh37)
Canonical SPDI:: NC_000006.12:87398164:T:A
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87398165T>A, NC_000006.11:g.88107883T>A, NM_022084.2:c.-50T>A, NR_026784.1:n.1042T>A

Select item 14698468308.

rs1469846830 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87399655 (GRCh38)
6:88109373 (GRCh37)
Canonical SPDI:: NC_000006.12:87399654:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000071/1 (TOMMO)
HGVS:: NC_000006.12:g.87399655T>C, NC_000006.11:g.88109373T>C, NM_022084.2:c.*205T>C, NR_026784.1:n.1472T>C

Select item 14640709099.

rs1464070909 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:87398299 (GRCh38)
6:88108017 (GRCh37)
Canonical SPDI:: NC_000006.12:87398298:C:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000006.12:g.87398299C>T, NC_000006.11:g.88108017C>T, NM_022084.2:c.85C>T, NR_026784.1:n.1176C>T, NM_022084.1:c.85C>T

Select item 145871131310.

rs1458711313 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87398155 (GRCh38)
6:88107873 (GRCh37)
Canonical SPDI:: NC_000006.12:87398154:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.00006/1 (TOMMO)
HGVS:: NC_000006.12:g.87398155A>G, NC_000006.11:g.88107873A>G, NM_022084.2:c.-60A>G, NR_026784.1:n.1032A>G

Select item 145231891011.

rs1452318910 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:87399664 (GRCh38)
6:88109382 (GRCh37)
Canonical SPDI:: NC_000006.12:87399663:C:A
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87399664C>A, NC_000006.11:g.88109382C>A, NM_022084.2:c.*214C>A, NR_026784.1:n.1481C>A

Select item 144643593312.

rs1446435933 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:87398083 (GRCh38)
6:88107801 (GRCh37)
Canonical SPDI:: NC_000006.12:87398082:G:A,NC_000006.12:87398082:G:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87398083G>A, NC_000006.12:g.87398083G>T, NC_000006.11:g.88107801G>A, NC_000006.11:g.88107801G>T, NM_022084.2:c.-132G>A, NM_022084.2:c.-132G>T, NR_026784.1:n.960G>A, NR_026784.1:n.960G>T

Select item 144388046613.

rs1443880466 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 6:87398159 (GRCh38)
6:88107877 (GRCh37)
Canonical SPDI:: NC_000006.12:87398158:TTT:TT
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.87398161del, NC_000006.11:g.88107879del, NM_022084.2:c.-54del, NR_026784.1:n.1038del

Select item 144317628314.

rs1443176283 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87397688 (GRCh38)
6:88107406 (GRCh37)
Canonical SPDI:: NC_000006.12:87397687:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87397688A>G, NC_000006.11:g.88107406A>G, NR_026784.1:n.565A>G

Select item 143865575415.

rs1438655754 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AAA [Show Flanks]
Chromosome:: 6:87397346 (GRCh38)
6:88107065 (GRCh37)
Canonical SPDI:: NC_000006.12:87397346:AAA:AAAAAA
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
AAA=0.000004/1 (TOPMED)
AAA=0.000021/3 (GnomAD)
AAA=0.005/3 (NorthernSweden)
HGVS:: NC_000006.12:g.87397347_87397349dup, NC_000006.11:g.88107065_88107067dup, NR_026784.1:n.224_226dup

Select item 143390385816.

rs1433903858 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87397492 (GRCh38)
6:88107210 (GRCh37)
Canonical SPDI:: NC_000006.12:87397491:T:C
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87397492T>C, NC_000006.11:g.88107210T>C, NR_026784.1:n.369T>C

Select item 143322365517.

rs1433223655 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:87399485 (GRCh38)
6:88109203 (GRCh37)
Canonical SPDI:: NC_000006.12:87399484:G:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000013/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87399485G>T, NC_000006.11:g.88109203G>T, NM_022084.2:c.*35G>T, NR_026784.1:n.1302G>T

Select item 143047931318.

rs1430479313 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:87397746 (GRCh38)
6:88107464 (GRCh37)
Canonical SPDI:: NC_000006.12:87397745:C:T
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87397746C>T, NC_000006.11:g.88107464C>T, NR_026784.1:n.623C>T

Select item 142611072219.

rs1426110722 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:87397335 (GRCh38)
6:88107053 (GRCh37)
Canonical SPDI:: NC_000006.12:87397334:G:A
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87397335G>A, NC_000006.11:g.88107053G>A, NR_026784.1:n.212G>A

Select item 142254175120.

rs1422541751 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:87397222 (GRCh38)
6:88106940 (GRCh37)
Canonical SPDI:: NC_000006.12:87397221:A:G
Gene:: LINC01590 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87397222A>G, NC_000006.11:g.88106940A>G, NR_026784.1:n.99A>G

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