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SRX5465485: 16S rRNA microbiome of primate milk samples
1 LS454 (454 GS FLX+) run: 3,466 spots, 1.3M bases, 919,921b downloads

Design: Each sample PCR in duplicate with 515F, 939R fusion primers and pooled together. Cleaned with spri beads. Each sample quantified using Qubit. Samples pooled equimolar.
Submitted by: Smithsonian Institution
Study: milk metagenome Raw sequence reads
show Abstracthide Abstract
We quantified milk microbiomes using 16S rRNA high-throughput sequencing for nine primate species and for six primate mothers sampled over lactation. Our dataset included humans (Homo sapiens, Philippines and USA) and eight nonhuman primate species living in captivity (bonobo [Pan paniscus], chimpanzee [Pan troglodytes], western lowland gorilla [Gorilla gorilla gorilla], Bornean orangutan [Pongo pygmaeus], Sumatran orangutan [Pongo abelii], rhesus macaque [Macaca mulatta], owl monkey [Aotus nancymaae]) and in the wild (mantled howler monkey [Alouatta palliata]). For a subset of the data, we paired microbiome data with nutrient and hormone assay results to quantify the effect of milk chemistry on milk microbiomes.
Sample:
SAMN10852074 • SRS4439294 • All experiments • All runs
Organism: Aotus nancymaae
Library:
Name: 85941
Instrument: 454 GS FLX+
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 3,466 spots, 1.3M bases, 919,921b
Run# of Spots# of BasesSizePublished
SRR86694873,4661.3M919,921b2019-05-29

ID:
7384122

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