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Report for CCDS27968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27968.1 Public Mus musculus 16 Rrn3 23 108 98 CCDS HistoryNCBI Gene:106298Re-query CCDS DB by CCDS ID:27968.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023363.7 ENSMUSP00000023363.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023363.7Link to Ensembl Protein Viewer:ENSMUSP00000023363.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023363Re-query CCDS DB by Protein ID:ENSMUSP00000023363
Original member Current member NCBI NM_001039521.1 NP_001034610.1 Accepted alive Link to Nucleotide Sequence:NM_001039521.1Link to Protein Sequence:NP_001034610.1Re-query CCDS DB by Nucleotide ID:NM_001039521Re-query CCDS DB by Protein ID:NP_001034610Link to BLAST:NP_001034610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034610.1 656 B2RS91 656 100% 0 0

Chromosomal Locations for CCDS 27968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13780757 13780839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13781993 13782098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13784073 13784129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13788778 13788867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13788960 13789089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13789533 13789592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13790621 13790684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13791920 13791989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13792948 13793046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13795985 13796077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13798612 13798750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13799886 13800016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13804949 13805079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13806559 13806743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13808982 13809090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13810504 13810656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13811522 13811609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13813090 13813272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGCGGCCCCGCTGCTTCACACGCGCTTGTCGGGCGATGTGACGGCAGCGGCCTCTGCCACGCTGAGTG
CGTCGCGGACTGGGCTTTCCGATATGCTCGCGTTAGAGAGCGATTTCTTCAATTCTCCTCCGAAAAAAAC
TGTTCGGTTTGGCGGAACTGTGACAGAAGTCTTACTGAAATACAAAAAGGGTGAAACAAATGACTTAGAG
TTGTTGAAGAACCAGCTGTCTGATCCTGATATAAAGGATGACCAGATCATTAACTGGCTACTAGAATTTC
GTTCCTCTGTCATGTACTTGACAAAAGACTTTGAGCAACTTATAAACATCATATTGAGATTGCCCTGGTT
GAATAGAAGTCAGAGAGTGGTGGAGGAGTATTTGGCTTTTCTTGGTAATCTTGTGTCTGCACAGACTGTC
TTCCTTAGACCATGTCTCAGCATGATTGCGTCTCATTTTGTACCTCCCCGAGTAATTGTCAAGGAAGGTG
GCATAGATGTTTCAGATTCTGATGACGAAGATGACAATCTTCCTGCAATTTTTGACACATGTCACAGAGC
CTTGCAAATAATAACAAGATATGTCCCATCGACACCATGGTTTCTAATGCCAATACTGGTGGAGAAATTC
CCGTTTGTGAGGAAGTCCGAGAGAACATTGGAATGTTATGTTCATAACTTATTAAGGATAAGTTTATATT
TCCCAACTTTGAGGCGTGAAATTCTGGAGCTTGTTATTGAAAAGCTACTCAAGTTAGATGTGAGTGTATC
GCGGCAGGATATTGAAGATGCTGAAGAGAAAGCAGCTCAGACTTGTGGTGGGACAGATACCACAGAAGGA
CTGTTTAATATGGATGAAGATGAGGACACTGACCCTGAGAAGAAAGCTGACCAGGAGCAGCCTAACCAGA
TGGCTCATCCCACCGCAGAGCGCCTGGACGTCCTGCTGTGCTTGCTGCTGTCCTACATTGAGGATGTCTG
CCGTGTGCACGGTAAAATTGATAACAATAAAACAAAGGATTTATACCGTGATCTGATATCCATCTTTGAC
AAACTTCTGTTGCCCACACATGCCTCCTGCCATGTACAGTTCTTCATGTTTTTCCTCTGCAGCTTCAAGT
TGGGATTTGCAGAAGCATTTTTGGAACATCTCTGGAAAAAGTTGCAGGATCCAAATAACCCCGCCATCAT
CAGGCAGGCTGCTGCAAATTATATTGGGAGCTTTTTGGCCAGAGCTAAATTTATTCCTCTTATCACTGTG
AAGACATGCCTGGATCTCTTGGTTAACTGGCTGCACATGTACCTTACTAACCAGGATTCGGGAACAAAGG
CTTTTTGTGACGTTGCACTCCATGGACCATTTTATTCAGCCTGCCAAGCTGTGTTCTACACTGTTGTTTT
TAGACACAAGCAGCTTTTGAGTGGAAACTTGAAGCAAGGTCTACAGTATCTTCAGAGTCTAAATTTTGAG
CGCATTGTGTTGAGCCAGCTGAACCCACTGAAGATCTGCCTGCCGCAAGTGGTTAATTTCTTTGCTGCTA
TCACAAATAAATACCAGCTGGTGTTCTGCTACACCATCATGGAGAGGAACAGTCGCCAGATGCTCCCCGT
TATCCGCAGCACCGCTGGTGGAGACTCCGTGCAGACCTGCACCAACCCACTGGACACTTTCTTCCCCTTT
GACCCTTGTGTGCTTAAGAGGTCAAAGAAGTTCATTGATCCTATTTATCAGATTTGGGAAGATGGGAGTG
CTGAAGAGCTTCAGGAGTTTAAGAAATCTACTAAAAAGGAGGTAGTGGAGGATGAAGATGATGACTTTTT
GAAAGGCGAGGTGCCCCAGAGTGACACAGTGACTGGCCTTACTCCGAGCTCCTTTGATACCCACTTCCAA
AGTCCTTCCAGTAGTGTGGGCTCCCCTCCTGTGCTGTATATACCAGGCCAGTCTCCACTCCTCACAAGGA
TCTATGATTGA

Translation (656 aa):
MAAPLLHTRLSGDVTAAASATLSASRTGLSDMLALESDFFNSPPKKTVRFGGTVTEVLLKYKKGETNDLE
LLKNQLSDPDIKDDQIINWLLEFRSSVMYLTKDFEQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTV
FLRPCLSMIASHFVPPRVIVKEGGIDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKF
PFVRKSERTLECYVHNLLRISLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTEG
LFNMDEDEDTDPEKKADQEQPNQMAHPTAERLDVLLCLLLSYIEDVCRVHGKIDNNKTKDLYRDLISIFD
KLLLPTHASCHVQFFMFFLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITV
KTCLDLLVNWLHMYLTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFE
RIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPF
DPCVLKRSKKFIDPIYQIWEDGSAEELQEFKKSTKKEVVEDEDDDFLKGEVPQSDTVTGLTPSSFDTHFQ
SPSSSVGSPPVLYIPGQSPLLTRIYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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