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Report for CCDS49945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49945.1 Public Mus musculus 17 Sft2d1 23 108 98 CCDS HistoryNCBI Gene:106489Re-query CCDS DB by CCDS ID:49945.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154553.1 ENSMUSP00000117294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154553.1Link to Ensembl Protein Viewer:ENSMUSP00000117294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154553Re-query CCDS DB by Protein ID:ENSMUSP00000117294
Original member Current member NCBI NM_134114.2 NP_598875.2 Accepted alive Link to Nucleotide Sequence:NM_134114.2Link to Protein Sequence:NP_598875.2Re-query CCDS DB by Nucleotide ID:NM_134114Re-query CCDS DB by Protein ID:NP_598875Link to BLAST:NP_598875.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598875.2 159 Q5SSN7 159 100% 0 0

Chromosomal Locations for CCDS 49945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8311223 8311285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8318844 8318930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8319419 8319501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8320600 8320681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8321800 8321835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8323277 8323335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8324434 8324463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8326955 8326994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGAGAAGCTGCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAGGTCCTGG
ATGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGTGGTTTGTCATATGCTTTGTTGCTGGCATTTTCTT
TTCATTCCTTGGAACGGGGTTGCTATGGCTTCCCAATGGCATGAAACTCTTTGCAGTATTTTACACCCTT
GGAAACCTTGCTGCATTGGCCAGTACATGCTTTTTAATGGGACCTGTGAAGCAACTGAAGAAAATGTTTG
AAACAACAAGATTGCTTGCAACAATTATTATGCTTTTGTGCCTGGTATTTACCCTGTGTGCTGCTCTGTG
GTGGCGGAAGAAGGGGCTGGCCTTACTCTTCTGCATATTGCAGTTCTTGTCGATGACCTGGTACAGTCTG
TCCTACATCCCGTATGCAAGGGACGCGGTGCTCAAGTGCTGCTCCTCACTCTTGGGTTGA

Translation (159 aa):
MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGMKLFAVFYTL
GNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSL
SYIPYARDAVLKCCSSLLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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