NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33219.1 Public Homo sapiens 2 SNRNP27 24 110 108 CCDS HistoryNCBI Gene:11017Re-query CCDS DB by CCDS ID:33219.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244227.8 ENSP00000244227.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244227.8Link to Ensembl Protein Viewer:ENSP00000244227.3Re-query CCDS DB by Nucleotide ID:ENST00000244227Re-query CCDS DB by Protein ID:ENSP00000244227
Original member Current member EBI ENST00000450162.6 ENSP00000395144.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450162.6Link to Ensembl Protein Viewer:ENSP00000395144.2Re-query CCDS DB by Nucleotide ID:ENST00000450162Re-query CCDS DB by Protein ID:ENSP00000395144
Original member Current member NCBI NM_006857.3 NP_006848.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006857.3Link to Protein Sequence:NP_006848.1Re-query CCDS DB by Nucleotide ID:NM_006857Re-query CCDS DB by Protein ID:NP_006848Link to BLAST:NP_006848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006848.1 155 Q8WVK2 155 100% 0 0

Chromosomal Locations for CCDS 33219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69893985 69894018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69895094 69895214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69896436 69896548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69897377 69897456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69903181 69903245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69904254 69904308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGGTCGCAGTCGCAGCCGCTCTCCACGGAGGGAACGTAGGCGTTCCCGGTCCACATCCCGGGAGAGAG
AACGCAGGCGCCGAGAAAGGTCCAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGATCCCCGCA
CCGAAGACGCTCCCGATCTCCAAGACGACATAGATCCACATCTCCTTCCCCTTCTCGACTGAAAGAAAGA
AGAGATGAGGAAAAGAAAGAAACAAAAGAAACAAAGAGCAAAGAACGGCAGATTACTGAGGAAGACTTAG
AGGGCAAAACAGAGGAAGAAATAGAAATGATGAAGTTAATGGGATTTGCCTCCTTTGACTCCACAAAAGG
TAAGAAGGTGGATGGCTCTGTAAATGCCTATGCCATAAATGTCTCTCAGAAGAGGAAGTACAGGCAGTAC
ATGAATCGAAAAGGTGGATTCAACAGACCTTTGGATTTCATTGCATGA

Translation (155 aa):
MGRSRSRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKER
RDEEKKETKETKSKERQITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQY
MNRKGGFNRPLDFIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH