NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36434.1 Public Mus musculus 12 Ahr 23 108 98 CCDS HistoryNCBI Gene:11622Re-query CCDS DB by CCDS ID:36434.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116436.8 ENSMUSP00000112137.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116436.8Link to Ensembl Protein Viewer:ENSMUSP00000112137.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116436Re-query CCDS DB by Protein ID:ENSMUSP00000112137
Original member Current member NCBI NM_013464.4 NP_038492.1 Accepted alive Link to Nucleotide Sequence:NM_013464.4Link to Protein Sequence:NP_038492.1Re-query CCDS DB by Nucleotide ID:NM_013464Re-query CCDS DB by Protein ID:NP_038492Link to BLAST:NP_038492.1

Chromosomal Locations for CCDS 36434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 35500689 35500700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35503713 35504976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35506245 35506386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35507420 35507529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35508130 35508332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35509966 35510096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35511059 35511170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35512859 35512948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35515021 35515124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35526681 35526868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35534562 35534623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGAGCAGCGGCGCCAACATCACCTATGCCAGCCGCAAGCGGCGCAAGCCGGTGCAGAAAACAGTAAAGC
CCATCCCCGCTGAAGGAATTAAGTCAAATCCTTCTAAGCGACACAGAGACCGGCTGAACACAGAGTTAGA
CCGCCTGGCCAGCCTGCTGCCCTTCCCGCAAGATGTTATTAATAAGCTGGACAAACTCTCTGTTCTTAGG
CTCAGCGTCAGCTACCTGAGGGCCAAGAGCTTCTTTGATGTTGCATTAAAGTCCACCCCTGCTGACAGAA
ATGGAGGCCAGGACCAGTGTAGAGCACAAATCAGAGACTGGCAGGATTTGCAAGAAGGAGAGTTCTTGTT
ACAGGCGCTGAATGGCTTTGTGCTGGTTGTCACAGCAGATGCCTTGGTCTTCTATGCTTCCTCCACTATC
CAAGATTACCTGGGCTTTCAGCAGTCTGATGTCATCCATCAGAGCGTATATGAGCTCATCCATACAGAAG
ACCGGGCGGAATTCCAGCGCCAGCTTCACTGGGCTCTAAACCCAGACTCTGCACAAGGAGTGGACGAAGC
CCATGGCCCTCCACAGGCAGCAGTCTATTATACCCCAGACCAGCTTCCTCCAGAGAACGCTTCTTTCATG
GAGAGGTGCTTCAGGTGCCGGCTGAGGTGCCTGCTGGATAATTCATCTGGTTTTCTGGCAATGAATTTCC
AAGGGAGGTTAAAGTATCTTCATGGACAGAACAAGAAAGGGAAGGACGGAGCGCTGCTTCCTCCACAACT
GGCTTTGTTTGCAATAGCTACTCCACTTCAGCCACCCTCCATCCTGGAAATTCGAACCAAAAACTTCATC
TTCAGGACCAAACACAAGCTAGACTTCACACCTATTGGTTGTGATGCCAAAGGGCAGCTTATTCTGGGCT
ATACAGAAGTAGAGCTGTGCACAAGAGGATCGGGGTACCAGTTCATCCATGCTGCAGACATACTTCACTG
TGCAGAATCCCACATCCGCATGATTAAGACTGGAGAAAGTGGCATGACAGTTTTCCGGCTTCTTGCAAAA
CACAGTCGCTGGAGGTGGGTCCAGTCCAATGCACGCTTGATTTACAGAAATGGAAGACCAGATTACATCA
TCGCCACTCAGAGACCACTGACGGATGAAGAAGGACGAGAGCATTTACAGAAGCGAAGTACGTCGCTGCC
CTTCATGTTTGCTACCGGAGAGGCTGTGTTGTACGAGATCTCCAGCCCTTTCTCTCCCATAATGGATCCC
CTACCAATACGCACCAAAAGCAACACTAGCAGGAAAGACTGGGCTCCCCAGTCAACCCCAAGTAAGGATT
CTTTCCACCCCAGTTCTCTTATGAGTGCCCTCATCCAGCAGGATGAGTCCATCTATCTGTGTCCTCCTTC
AAGCCCTGCGCTGTTAGACAGCCATTTTCTCATGGGCTCCGTGAGCAAGTGCGGGAGTTGGCAAGACAGC
TTTGCGGCCGCAGGAAGTGAGGCTGCGCTGAAACATGAGCAAATTGGCCATGCTCAGGACGTGAACCTTG
CACTCTCTGGCGGCCCCTCAGAGCTCTTTCCGGATAATAAAAATAATGACTTGTACAGCATCATGAGGAA
CCTTGGGATTGATTTTGAAGATATCAGAAGCATGCAGAACGAGGAGTTCTTCAGAACTGACTCCACCGCT
GCTGGTGAGGTTGACTTCAAAGACATCGACATAACGGACGAAATCCTGACCTACGTGCAGGATTCCCTGA
ACAATTCAACTTTGCTGAACTCGGCTTGCCAGCAGCAGCCTGTGACTCAGCACCTAAGCTGTATGCTGCA
GGAGCGCCTGCAACTAGAGCAACAGCAACAGCTTCAGCAGCCCCCGCCGCAGGCTCTGGAGCCCCAGCAG
CAGCTGTGTCAGATGGTGTGCCCCCAGCAAGATCTGGGTCCGAAGCACACGCAAATCAACGGCACGTTTG
CAAGTTGGAACCCCACCCCTCCCGTGTCTTTCAACTGTCCCCAGCAGGAACTAAAGCACTATCAGCTCTT
TTCCAGCTTACAGGGGACTGCTCAGGAATTTCCCTACAAACCAGAGGTGGACAGTGTGCCTTACACACAG
AACTTTGCTCCCTGTAATCAGCCTCTGCTTCCAGAACATTCCAAGAGTGTGCAGTTGGACTTCCCTGGAA
GGGATTTTGAACCGTCCCTGCATCCCACTACTTCTAATTTAGATTTTGTCAGTTGTTTACAAGTTCCTGA
AAACCAAAGTCATGGGATAAACTCACAGTCCGCCATGGTCAGTCCTCAGGCATACTATGCTGGGGCCATG
TCCATGTATCAGTGCCAGCCAGGGCCACAGCGCACCCCTGTGGACCAGACGCAGTACAGCTCTGAAATTC
CAGGTTCTCAGGCATTCCTAAGCAAGGTGCAGAGTTGA

Translation (805 aa):
MSSGANITYASRKRRKPVQKTVKPIPAEGIKSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLR
LSVSYLRAKSFFDVALKSTPADRNGGQDQCRAQIRDWQDLQEGEFLLQALNGFVLVVTADALVFYASSTI
QDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHWALNPDSAQGVDEAHGPPQAAVYYTPDQLPPENASFM
ERCFRCRLRCLLDNSSGFLAMNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFI
FRTKHKLDFTPIGCDAKGQLILGYTEVELCTRGSGYQFIHAADILHCAESHIRMIKTGESGMTVFRLLAK
HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRSTSLPFMFATGEAVLYEISSPFSPIMDP
LPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIYLCPPSSPALLDSHFLMGSVSKCGSWQDS
FAAAGSEAALKHEQIGHAQDVNLALSGGPSELFPDNKNNDLYSIMRNLGIDFEDIRSMQNEEFFRTDSTA
AGEVDFKDIDITDEILTYVQDSLNNSTLLNSACQQQPVTQHLSCMLQERLQLEQQQQLQQPPPQALEPQQ
QLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQQELKHYQLFSSLQGTAQEFPYKPEVDSVPYTQ
NFAPCNQPLLPEHSKSVQLDFPGRDFEPSLHPTTSNLDFVSCLQVPENQSHGINSQSAMVSPQAYYAGAM
SMYQCQPGPQRTPVDQTQYSSEIPGSQAFLSKVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH