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Report for CCDS47343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47343.1 Public Homo sapiens 5 C5orf47 24 110 108 CCDS HistoryNCBI Gene:133491Re-query CCDS DB by CCDS ID:47343.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340147.7 ENSP00000340887.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340147.7Link to Ensembl Protein Viewer:ENSP00000340887.6Re-query CCDS DB by Nucleotide ID:ENST00000340147Re-query CCDS DB by Protein ID:ENSP00000340887
Original member Current member NCBI NM_001144954.2 NP_001138426.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144954.2Link to Protein Sequence:NP_001138426.1Re-query CCDS DB by Nucleotide ID:NM_001144954Re-query CCDS DB by Protein ID:NP_001138426Link to BLAST:NP_001138426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138426.1 176 Q569G3 176 100% 0 0

Chromosomal Locations for CCDS 47343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 173989264 173989588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173998153 173998238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173999700 173999799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 174001196 174001215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGGCGGCAGGCCGGGGTCGGGAGCAGGACTCGGCGCGCTTCGTCTATGTGACGCGCTTCGGCTCGC
ATCAGTGCAGTGGCGTCCTGCAACTGGGCGGCCGTGGAGCTCAAGGCCTTTGGGGTCAGGGGCCTGGGGC
AGGCTGTCGCCAGGAGAAGCCGAGGGAAGCAATGGCGGTGGCGGGCGTTCAGGGTGGCAGCGAGCTGCCC
CTCGGTTCCCAGCTCAGGGTCCCCACGACCCCTGGTGTGGAGGCTGCGGCCTCTGCCTCCTCCCAGCTGC
GGGCATCGAGAGTTCAGAGCGGCACCAGACAGTCGGCGCGTGCAGGTTTAATCCAGAAGGATGCAGCTAA
AAAGTATGATTTTCCCATACCATTGAATGAAGCTTCCAAAATAATGAAGAAAAAGAAAAAGGTTTTAGTA
TGGAATAGAGTATACAAAGTCATTTCAAGAATGCTTGAAGAAAATGAAAAATATAGACACAGGCTGAAAT
GCCAAAGGTTATCTAGTGAAAGCTCAAATTACACAAGATGA

Translation (176 aa):
MAAAGRGREQDSARFVYVTRFGSHQCSGVLQLGGRGAQGLWGQGPGAGCRQEKPREAMAVAGVQGGSELP
LGSQLRVPTTPGVEAAASASSQLRASRVQSGTRQSARAGLIQKDAAKKYDFPIPLNEASKIMKKKKKVLV
WNRVYKVISRMLEENEKYRHRLKCQRLSSESSNYTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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