NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13467.1 Public Homo sapiens 20 APCDD1L 24 110 108 CCDS HistoryNCBI Gene:164284Re-query CCDS DB by CCDS ID:13467.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371149.8 ENSP00000360191.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371149.8Link to Ensembl Protein Viewer:ENSP00000360191.3Re-query CCDS DB by Nucleotide ID:ENST00000371149Re-query CCDS DB by Protein ID:ENSP00000360191
Original member Current member NCBI NM_153360.3 NP_699191.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153360.3Link to Protein Sequence:NP_699191.1Re-query CCDS DB by Nucleotide ID:NM_153360Re-query CCDS DB by Protein ID:NP_699191Link to BLAST:NP_699191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699191.1 501 Q8NCL9 501 100% 0 0

Chromosomal Locations for CCDS 13467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58460790 58461554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58467106 58467658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58470609 58470747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58514659 58514707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGCCCGCAGCCATGCTCCCCTACGCTTGCGTCCTGGTGCTTTTGGGAGCCCACACTGCACCGGCGGCTG
GGGAGGCCGGGGGCAGCTGCCTGCGCTGGGAACCCCACTGCCAGCAGCCCTTGCCAGATAGAGTGCCCAG
CACTGCGATCCTGCCTCCACGCCTTAATGGACCTTGGATCTCCACAGGCTGCGAGGTGCGCCCAGGACCG
GAGTTCCTGACCCGCGCCTACACCTTCTACCCCAGCCGGCTCTTTCGAGCCCACCAGTTCTACTACGAGG
ACCCCTTCTGCGGGGAACCTGCCCACTCGCTGCTCGTCAAGGGCAAAGTCCGCCTGCGCCGGGCCTCCTG
GGTCACCCGGGGAGCCACCGAGGCCGACTACCACCTGCACAAGGTGGGCATCGTCTTCCACAGCCGCCGG
GCCCTGGTCGACGTCACCGGGCGCCTCAACCAGACCCGCGCCGGCCGGGACTGCGCGCGGCGGCTGCCTC
CGGCCCGGGCCTGGCTGCCTGGGGCGCTGTACGAGCTGCGGAGCGCCCGGGCTCAGGGGGACTGCCTGGA
GGCGCTGGGCCTCACCATGCACGAGCTCAGCCTGGTCCGCGTGCAGCGCCGCCTGCAGCCGCAGCCCCGG
GCGTCGCCCCGGCTGGTGGAGGAGCTGTACCTGGGGGACATCCACACCGACCCGGCGGAGAGGCGGCACT
ACCGGCCCACGGGCTACCAGCGCCCGCTGCAGAGCGCACTGCACCACGTGCAGCCGTGCCCAGCCTGTGG
CCTCATTGCCCGCTCCGATGTGCACCACCCGCCCGTGCTGCCGCCCCCTCTGGCCCTGCCCCTGCACCTG
GGCGGCTGGTGGGTCAGCTCGGGGTGCGAGGTGCGCCCAGCAGTCCTGTTCCTCACCCGGCTCTTCACTT
TCCACGGGCACAGCCGCTCCTGGGAAGGGTATTACCACCACTTCTCAGACCCAGCCTGCCGGCAGCCCAC
CTTCACCGTGTATGCCGCCGGCCGCTACACCAGGGGCACGCCATCCACCAGGGTCCGCGGCGGCACCGAG
CTGGTGTTTGAGGTCACACGGGCCCATGTGACCCCCATGGACCAGGTCACCACGGCCATGCTCAACTTCT
CTGAGCCAAGCAGCTGTGGGGGTGCGGGGGCCTGGTCCATGGGCACTGAGCGGGATGTCACAGCCACCAA
CGGCTGCCTACCGCTGGGCATCCGGCTCCCGCATGTGGAGTACGAGCTTTTCAAGATGGAACAAGACCCC
CTCGGGCAAAGCCTGCTCTTCATCGGACAAAGGCCCACCGATGGCTCAAGTCCCGATACCCCAGAGAAAC
GTCCCACCTCCTACCAAGCACCCCTGGTGCTCTGTCATGGGGAGGCCCCCGACTTCTCCAGGCCACCGCA
GCACAGGCCATCGCTGCAGAAGCACCCCAGCACAGGGGGTCTTCACATAGCCCCCTTCCCACTTCTGCCC
CTAGTTCTAGGGCTGGCCTTCCTCCACTGGCTATGA

Translation (501 aa):
MPAAMLPYACVLVLLGAHTAPAAGEAGGSCLRWEPHCQQPLPDRVPSTAILPPRLNGPWISTGCEVRPGP
EFLTRAYTFYPSRLFRAHQFYYEDPFCGEPAHSLLVKGKVRLRRASWVTRGATEADYHLHKVGIVFHSRR
ALVDVTGRLNQTRAGRDCARRLPPARAWLPGALYELRSARAQGDCLEALGLTMHELSLVRVQRRLQPQPR
ASPRLVEELYLGDIHTDPAERRHYRPTGYQRPLQSALHHVQPCPACGLIARSDVHHPPVLPPPLALPLHL
GGWWVSSGCEVRPAVLFLTRLFTFHGHSRSWEGYYHHFSDPACRQPTFTVYAAGRYTRGTPSTRVRGGTE
LVFEVTRAHVTPMDQVTTAMLNFSEPSSCGGAGAWSMGTERDVTATNGCLPLGIRLPHVEYELFKMEQDP
LGQSLLFIGQRPTDGSSPDTPEKRPTSYQAPLVLCHGEAPDFSRPPQHRPSLQKHPSTGGLHIAPFPLLP
LVLGLAFLHWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH