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Report for CCDS28734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28734.1 Public Mus musculus 17 Mog 23 108 98 CCDS HistoryNCBI Gene:17441Re-query CCDS DB by CCDS ID:28734.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102665.10 ENSMUSP00000099726.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102665.10Link to Ensembl Protein Viewer:ENSMUSP00000099726.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102665Re-query CCDS DB by Protein ID:ENSMUSP00000099726
Original member Current member NCBI NM_010814.2 NP_034944.2 Accepted alive Link to Nucleotide Sequence:NM_010814.2Link to Protein Sequence:NP_034944.2Re-query CCDS DB by Nucleotide ID:NM_010814Re-query CCDS DB by Protein ID:NP_034944Link to BLAST:NP_034944.2

Chromosomal Locations for CCDS 28734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37011504 37011517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37012063 37012083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37012336 37012452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37014750 37014770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37015068 37015088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37017488 37017601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37020371 37020718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37023112 37023199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCCTGTTTGTGGAGCTTCTCTTGGCCCAGCTGCTTCCTCTCCCTTCTCCTCCTCCTTCTCCTCCAGT
TGTCATGCAGCTATGCAGGACAATTCAGAGTGATAGGACCAGGGTATCCCATCCGGGCTTTAGTTGGGGA
TGAAGCAGAGCTGCCGTGCCGCATCTCTCCTGGGAAAAATGCCACGGGCATGGAGGTGGGTTGGTACCGT
TCTCCCTTCTCAAGAGTGGTTCACCTCTACCGAAATGGCAAGGACCAAGATGCAGAGCAAGCACCTGAAT
ACCGGGGACGCACAGAGCTTCTGAAAGAGACTATCAGTGAGGGAAAGGTTACCCTTAGGATTCAGAACGT
GAGATTCTCAGATGAAGGAGGCTACACCTGCTTCTTCAGAGACCACTCTTACCAAGAAGAGGCAGCAATG
GAGTTGAAAGTGGAAGATCCCTTCTATTGGGTCAACCCCGGTGTGCTGACTCTCATCGCACTTGTGCCTA
CGATCCTCCTGCAGGTCTCTGTAGGCCTTGTATTCCTCTTCCTGCAGCACAGACTGAGAGGAAAACTTCG
TGCAGAAGTAGAGAATCTCCATCGGACTTTTGATCCTCACTTCCTGAGGGTGCCCTGCTGGAAGATAACA
CTGTTTGTTATTGTGCCTGTTCTTGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTGCACCGAA
GACTGGCAGGACAGTTTCTTGAAGAGCTAAGAAACCCCTTTTGA

Translation (247 aa):
MACLWSFSWPSCFLSLLLLLLLQLSCSYAGQFRVIGPGYPIRALVGDEAELPCRISPGKNATGMEVGWYR
SPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKETISEGKVTLRIQNVRFSDEGGYTCFFRDHSYQEEAAM
ELKVEDPFYWVNPGVLTLIALVPTILLQVSVGLVFLFLQHRLRGKLRAEVENLHRTFDPHFLRVPCWKIT
LFVIVPVLGPLVALIICYNWLHRRLAGQFLEELRNPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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