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Report for CCDS10541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10541.1 Public Homo sapiens 16 EMP2 24 110 108 CCDS HistoryNCBI Gene:2013Re-query CCDS DB by CCDS ID:10541.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359543.8 ENSP00000352540.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359543.8Link to Ensembl Protein Viewer:ENSP00000352540.3Re-query CCDS DB by Nucleotide ID:ENST00000359543Re-query CCDS DB by Protein ID:ENSP00000352540
Original member Current member EBI ENST00000536829.1 ENSP00000445712.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536829.1Link to Ensembl Protein Viewer:ENSP00000445712.1Re-query CCDS DB by Nucleotide ID:ENST00000536829Re-query CCDS DB by Protein ID:ENSP00000445712
Original member Current member NCBI NM_001424.6 NP_001415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001424.6Link to Protein Sequence:NP_001415.1Re-query CCDS DB by Nucleotide ID:NM_001424Re-query CCDS DB by Protein ID:NP_001415Link to BLAST:NP_001415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001415.1 167 P54851 167 100% 0 0

Chromosomal Locations for CCDS 10541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10532905 10533092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10537928 10538074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10543570 10543660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10547540 10547617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGTTGGTGCTTCTTGCTTTCATCATCGCCTTCCACATCACCTCTGCAGCCTTGCTGTTCATTGCCACCG
TCGACAATGCCTGGTGGGTAGGAGATGAGTTTTTTGCAGATGTCTGGAGAATATGTACCAACAACACGAA
TTGCACAGTCATCAATGACAGCTTTCAAGAGTACTCCACGCTGCAGGCGGTCCAGGCCACCATGATCCTC
TCCACCATTCTCTGCTGCATCGCCTTCTTCATCTTCGTGCTCCAGCTCTTCCGCCTGAAGCAGGGAGAGA
GGTTTGTCCTAACCTCCATCATCCAGCTAATGTCATGTCTGTGTGTCATGATTGCGGCCTCCATTTATAC
AGACAGGCGTGAAGACATTCACGACAAAAACGCGAAATTCTATCCCGTGACCAGAGAAGGCAGCTACGGC
TACTCCTACATCCTGGCGTGGGTGGCCTTCGCCTGCACCTTCATCAGCGGCATGATGTACCTGATACTGA
GGAAGCGCAAATAG

Translation (167 aa):
MLVLLAFIIAFHITSAALLFIATVDNAWWVGDEFFADVWRICTNNTNCTVINDSFQEYSTLQAVQATMIL
STILCCIAFFIFVLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYTDRREDIHDKNAKFYPVTREGSYG
YSYILAWVAFACTFISGMMYLILRKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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