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Report for CCDS49854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49854.1 Public Mus musculus 16 Cfap44 23 108 98 CCDS HistoryNCBI Gene:212517Re-query CCDS DB by CCDS ID:49854.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099742.8 ENSMUSP00000097331.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099742.8Link to Ensembl Protein Viewer:ENSMUSP00000097331.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099742Re-query CCDS DB by Protein ID:ENSMUSP00000097331
Original member Current member EBI ENSMUST00000120049.7 ENSMUSP00000113908.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120049.7Link to Ensembl Protein Viewer:ENSMUSP00000113908.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120049Re-query CCDS DB by Protein ID:ENSMUSP00000113908
Original member Current member NCBI NM_001033247.1 NP_001028419.1 Accepted alive Link to Nucleotide Sequence:NM_001033247.1Link to Protein Sequence:NP_001028419.1Re-query CCDS DB by Nucleotide ID:NM_001033247Re-query CCDS DB by Protein ID:NP_001028419Link to BLAST:NP_001028419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028419.1 1843 E9Q5M6 1843 100% 0 0

Chromosomal Locations for CCDS 49854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44401426 44401516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44404022 44404147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44404611 44404764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44407309 44407471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44408883 44408985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44410295 44410511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44411412 44411526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44413648 44413812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44415898 44416053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44416351 44416398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44416810 44416909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44418084 44418178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44419125 44419334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44420089 44420199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44421122 44421280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44422248 44422490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44429817 44429962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44431932 44432202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44433419 44433474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44433644 44433806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44435439 44435569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44437127 44437323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44438997 44439171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44449030 44449207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44451459 44451968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44455462 44455665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44460147 44460342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44468372 44468482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44470733 44470863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44473811 44473927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44475183 44475384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44478905 44479065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44479840 44479974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44481241 44481432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5532 nt):
ATGAAGGAGCCAGATGACCAAGACACTTCTGATGGGGGGAGATCGGGATCAAGGAATGAGGGAAAGCTGG
CTCATAAGTCCATTTTGAAATCTTCACAAGACACCACAGCTGACTCATATACCGACGGGGAAGAGTCGTA
TCTGGGCGATGACTTAGATTTGGACGACATGGACGAAAGCTCGCATTCATCTCAAGAGTACGTTCAGGCT
CCTGCACCTTCCCAGGAACCTCCTGTTGAAGTTAAGGAAGAACCAGAAGCCGACGTAAAGAAGGTGCTCT
CCGAGACCTTCTATTACGATTACCCGGAGCTTGTTTCCATACCATATGTGTCTTCGGAAGAGAGGATCCC
ACTTTATTTTCTCACCCTCAACCATTCTTTTGGTTATGACTGCAGAAAGCGAGCCAACCTACAGCTTCTG
GACAGCAACACTTTATTGTACGTGGCTGGGAACCAGATGGTCCTGCTGGATTTTAAAGACAAGACACAAA
TTTACCTGCAGAGTAGCAGTGGCCAAGGGATTGGTGCCATTGGGGTCCATCCAAAGAAAACTTACTTCGC
AGTTGCCGAAAAAGGAAGTTTCCCAAAGATTATCATCTACGAGTACCCTTCTCTGAAGCCCTACAGGATC
TTGAGAGATGGGGCAGAAAAAGCCTATGCTTATGTGGACTTTAACAACGAGGGGAACTTGCTGGCCTCTG
TTGGCTGTCATCCTGATTACACAATAACCATCTGGGGCTGGAAGGAAGAGCAGCCCATACTGAGAACGAA
AGCGTTTTCTCAGGACGTCTTTAAGGTCACTTTCAATCCTGATAATGATGAGCAATTAACTACCTCAGGA
TCCGGCCACATCAAGTTCTGGGAGATGGCTTTTACATTCACTGGTCTCAAGCTGCAAGGATCACTGGGGC
GATTTGGCAAAACATCTACCAGTGACATAGAGGGCTATGCAGAGCTTCCCGACGGGAAGGTTCTCTCAGG
GTCAGAATGGGGCAACCTGCTGCTTTGGGAAGGCAGCCTCATCAAGGTGGAACTCTGTCGGACTGGCATG
AAGTCTTGTCACAGCGGTTCCATTAACCAGATAATGCTGGATGAGGGAGAAGTGATCACCGCCGGTTCGG
ATGGCAGCGTTAGGATATGGGATTTTGAGACAATCGACACTGCTGACGTTATAGATGATACTGGATTGTT
GGAGATAGAACCTATTAATGAACTTCACATAGACAAGAGTGTCAACCTCTTCTCAATGATCAAGATGAAT
GAAGTTGGAAATAATTTTTGGCTGGCTCAGGATGCCAATGGAGCCATATGGAAGCTTGACCTTAGCTTTT
CAAATATTACCCAGGATCCAGAATGCCTCTTCTCTTTCCACTCTGGACCGATTGCAGCCTTGGCTGTTTC
TCCTCTCACTTATCTCATGGCCACAACTGCTATGGACTGCTCTGTTCGTGTCTATGATTTTTCTAGTAAA
AACCCTTTGGTCCATATGAAATTTAAACAAGGAGGCACATCCCTCATTTGGGCACCCCGATCAGTAAGCG
TTTCTGCATCACAGATTGTAGTAGGATTCCAAGACGGCGTTGTCCGAGTTCTTGAACTTTTTGACCCAAA
AGGACTTACAGTTTATGCAGGACGGAAGAAAATCCCAGATGCTGAGTTACATTTGAAATATGTCTTCAAA
CCCCATACTGATGAAGTTACAGCTTTAGCTTATGAACGTGATGGGGATATCTTAGCCACTGGGAGTGAAG
ACAAGACTGTCTTCTTTTTTGATGTGGAGAAAGAATACAAGCCGATTGGTTTTTTTAACACTCCTGGGCC
CATTTGCCAGTTGATGTGGTCTCCAGCCAGTCATCCTGAAAAAACTTTATTGATCATCTGTGAGAATGGC
TACATTCTTGAAAGTCTATGCCCAACCATTAAGGACGTAGATGACCAGAATGTTATCACGTTTGCAATCC
CGAACGTGTTCCTCCGATGCTTCCATTTCACGAGTGTCAAATCTAAGATTTTGAGATTTTTAGAAGTACA
AAGGAGAGAACAACAGAAGATGTTGAAGGAGAAGGAAAAGTTAGAAAGGAGGATGAAGCTAGCAGAAGAG
AGGGAAGCCTTTGGAGAAGAGGAAATACCAGAGGAGGAGACCAGTGAGGAAGGGGAAGAGGAGGAGCCGC
CGCTGCCTGAGATCTTCATGCCACCAACACCCTCCCCTATCCTGTGTGGCTTTTACTCGGAGCCAGGGAA
GTTCTGGGTGTCGTTGGGCAACTATGATGCTGGCTTTCTCTATCACTGTCAGTTTCCGTCATATCTCCAC
AACAGTGATTTCCAAAAACAGGAAAATGAACCATTTGATTTCCGAGTTCTTGAGAATACAGAAGACAACC
CCATCAGAAATATCACTTTCAGTAATGACCAAACTATGATGTTCTGCGGGATGACAAATGGAGCGATTCG
AGTGTATGTCTTAAGTGAGAACGACCCCTTCCTGGTCAGTTTGCAGCACTACTGGCATTTCAATGTGCAT
GACAATAATTATGGATCTATTAAAAGTATCACTTCGAGTTTTGATGACCAGTATTTGCTGACGGCTGGGG
AAGATGGTAATATCTTTGTTTTCGACATTTTTTCTGAATTTATTGTCCCGAAAGGAATCAAAGCCAAAGT
ACCATCACCCAGGTTTGGGATTGAATCAGAGGCCGCTCCAGAAGACATCGAAGATCCCAAAGCCTACAGC
ATTGAGAACGCCAGGAAGAAACGAGAGCATGACAAGTTAATGAAGAAAGTAGAAGAACTAAAAGCTCACA
AGAGAGAACAAATAAAAATTTTGAGGAATGAGTTTTGGAAGCTGTTAGAGTTGAATAAAGAGTTACCAGC
GCATATGCAGTTCCAAAGGACGGATTTCAATATTGATGCCAAAATTCACGCTGAGATCCACAAGAAAACA
AGTTTGAAAATAGAACAAGTGGAAAAGGAACTAGCTTGGGAAAAACAGAAACACGAGCTCGGTCTGAAGA
AGCTGCAGGACAGATTTCGTGAACCATTGGAAAGTGACACCATCGTGGTTTACGCCACCCAGAGTGACCA
CCAGATAGCCTCCTATAGACTGGTGAAGCCCTCTAAATATTCCAAGTTAAAGCGTCCAAGCCAGTCTGAG
AGAAGACAAAGCAAAATGGAGAGGCTTGAAAAGGAAGGGCCGGGCAAGAAGGAGAGCCAGAGAGATACAG
GTGGAAGTATTAGCCTACAAGAAGAGTCAGTGTTGGAAAAAGGGAAGAAATTTCGGCCTAGAACTTTAAG
TGAAATTATGGTAGAAAACCAAATCGAGAAAACAAAGAAACTCATACAACAAGCTGAGCGGGCTCAATTT
AAGATTCTCCAGCGCAAAAAGGAATGGGAGGAGCTTTACAAAAGCAAACCTGACGATGACTATGAAGATC
CCAAAGATGTTCAGGCCATCAAAGAAGCCCAAACATACATGGGGGATTTCAATCTGAAGACAGCCCCGGA
CTACAAGATCCCTGAGCACATGAGAATAAATGCAGCCAAGAAGGAGGAGGAGCTGGGGTACCTTGACACG
ATGGCCCACGGGAAGAAGAGGTACATGAACAAGTGCATCCTTTCCCTTCGAGATCTCAAGTTGGCTGTCA
TTGAGGAAATCCAGTGCCTGGTCCAAGAACTGAAGAACATTCAGTCTTCCATCCCCGCGTCCAAGCACAT
GCCCATCCCCCAGGTCCCGCAGATCTATCCTGAGGAAGTCCCAGAAAGGAGATTCCAGTACGACGAGGAA
ACACTCTTGAGATTTCAGAGAAAGCAGAAGAAACGGCAGGATAAGAGCAGCAGCAAGCAGTCGGGAACAG
GATCTGGGGGCTCAGCCGGAGGAGGGCTAGTAGGGTTCCTCAAACTGTCCTCGGGAAAGGAGGGAGACCT
GACAACCAGAGACTCCCTGTCTCGCTCGTCCAAGGCATCAGCGCTCCTGGAGCTTCCGAAGCCCGTCGAG
TTTGAGAAGGCGGAGCCAAGCGACGCGGAGCTGGAGATTATGAAAAGAGACGAGGTTAAACATTTATACA
TGCAACAGTTTTTGTGCAACAGGATCAACGAACTGACTGTCACTTTCGACGCAGAACTCCATCTTCTAAG
ACATCAGAAACTGAAGCTAGATACGAAAATGAAATTATCTGACCTTCACCATCTCACATTATTTCAAGAA
ATGCTTCTCCTGAAGAATTTTGAAAAACAGGAAAATATTCTTCAAGAGAGAGTTAACTCCTTAGACAAAG
AGGAGCAAGACATGCAATGGAAAATAAATGAAACTCTTAAAGAGATGGAAGAGAAAAAGAATGAAATCAC
CAAACTCCAGGATCAGGAAAAGGCGCTCTACGCTGGCTTCCAGGCAGCCCTTGGAGAAAACAATAAATTT
GCAAACTTCCTCATGAAGGTCCTGAAGAAGAAGATTAAGCGGGCAAAGAAGAAGGAAGTTGAGGGAGATG
CTGATGAGGATGAAGAGAGTGAGGAGTCCAGTGAAGAGGAGTCCAGCCTGGAGAGCGACGAGGATGCGTC
CGGATCTGAAGATGACGTTTTCGATGATTCTATCTGCCCGACAAATTGTGATGTAAGTCTCTTTGAACTG
GCCCTCCAACTCCGAGAGAAAAGACTGGACATTGAGGAAGCCTTAGTTGAAGAAAAGAAAATTGTTGATA
ACCTGAAAAAAGAATATGATACAATCTCCAAAAAGGTAAAAGTTGTGGCAACCAATCTGAATGCAGCCGA
GGAGGCCCTGGAGGCTTATCAGCGAGAGAAACAGCAGAGGCTGAACGAGCTGCTGGTCGTCATCCCTCTG
AAGCTCCACCAGATAGAGTATATGGAATTTGGGGAGGTGCCTGAAGACCTTTCTGGGACCTTGGTCTTCT
CCAACCACTCCCTCGATCGGCTGCAAGAACGAATTGTACAGCTCCAGGAGGAAAACGCCAAGCAACAAAA
ACTGAACAAAGAATGCAGGGAGAGGCGGAAGCTGCTCATCCGGGAAAAGAGAGAGATGGCAAAAACCATC
AGCAAAATGGAAGAAACTGTCCGGGAGCTGATGATCAGCAAGTTTGGCCGCGTGATCGATCTGGAAGCCC
TCCAGACCCTTTCTGTTAACACAACCCTTGAAGAACTGAAGATCAAAAAGCTTCGGAAGGAGCTATCCAA
CGCAAAGGAGCTAAGGATGTGGGAGGAGAAGATCGCTCAAGTGCGCTGGGACCTGATGATGAAGACGAAG
GAACACACCAAAAAGCTTCACCAGATGAACGACCTGTGCCTCGAGAAGAAGAAACTTGATTCCAGGTTGA
ACACTCTCCAGAACCAGCAGGGAAACGCCTTCCAGGGCCTTCGGAAAGCCGATATAGTGGCAAAGCAGAA
GGTCACCGAACTGGTCCAAACCCAGTTAGAGAAGATCACGGCCTTAAAAGAAGAGATTGAGCTTTTGCGG
AAGAAGGGGGGGCTCCTCCTCCCGCCTATCACCCCCAAGCCAAAGAACGAGATGAAGCCCATGGACACTT
AA

Translation (1843 aa):
MKEPDDQDTSDGGRSGSRNEGKLAHKSILKSSQDTTADSYTDGEESYLGDDLDLDDMDESSHSSQEYVQA
PAPSQEPPVEVKEEPEADVKKVLSETFYYDYPELVSIPYVSSEERIPLYFLTLNHSFGYDCRKRANLQLL
DSNTLLYVAGNQMVLLDFKDKTQIYLQSSSGQGIGAIGVHPKKTYFAVAEKGSFPKIIIYEYPSLKPYRI
LRDGAEKAYAYVDFNNEGNLLASVGCHPDYTITIWGWKEEQPILRTKAFSQDVFKVTFNPDNDEQLTTSG
SGHIKFWEMAFTFTGLKLQGSLGRFGKTSTSDIEGYAELPDGKVLSGSEWGNLLLWEGSLIKVELCRTGM
KSCHSGSINQIMLDEGEVITAGSDGSVRIWDFETIDTADVIDDTGLLEIEPINELHIDKSVNLFSMIKMN
EVGNNFWLAQDANGAIWKLDLSFSNITQDPECLFSFHSGPIAALAVSPLTYLMATTAMDCSVRVYDFSSK
NPLVHMKFKQGGTSLIWAPRSVSVSASQIVVGFQDGVVRVLELFDPKGLTVYAGRKKIPDAELHLKYVFK
PHTDEVTALAYERDGDILATGSEDKTVFFFDVEKEYKPIGFFNTPGPICQLMWSPASHPEKTLLIICENG
YILESLCPTIKDVDDQNVITFAIPNVFLRCFHFTSVKSKILRFLEVQRREQQKMLKEKEKLERRMKLAEE
REAFGEEEIPEEETSEEGEEEEPPLPEIFMPPTPSPILCGFYSEPGKFWVSLGNYDAGFLYHCQFPSYLH
NSDFQKQENEPFDFRVLENTEDNPIRNITFSNDQTMMFCGMTNGAIRVYVLSENDPFLVSLQHYWHFNVH
DNNYGSIKSITSSFDDQYLLTAGEDGNIFVFDIFSEFIVPKGIKAKVPSPRFGIESEAAPEDIEDPKAYS
IENARKKREHDKLMKKVEELKAHKREQIKILRNEFWKLLELNKELPAHMQFQRTDFNIDAKIHAEIHKKT
SLKIEQVEKELAWEKQKHELGLKKLQDRFREPLESDTIVVYATQSDHQIASYRLVKPSKYSKLKRPSQSE
RRQSKMERLEKEGPGKKESQRDTGGSISLQEESVLEKGKKFRPRTLSEIMVENQIEKTKKLIQQAERAQF
KILQRKKEWEELYKSKPDDDYEDPKDVQAIKEAQTYMGDFNLKTAPDYKIPEHMRINAAKKEEELGYLDT
MAHGKKRYMNKCILSLRDLKLAVIEEIQCLVQELKNIQSSIPASKHMPIPQVPQIYPEEVPERRFQYDEE
TLLRFQRKQKKRQDKSSSKQSGTGSGGSAGGGLVGFLKLSSGKEGDLTTRDSLSRSSKASALLELPKPVE
FEKAEPSDAELEIMKRDEVKHLYMQQFLCNRINELTVTFDAELHLLRHQKLKLDTKMKLSDLHHLTLFQE
MLLLKNFEKQENILQERVNSLDKEEQDMQWKINETLKEMEEKKNEITKLQDQEKALYAGFQAALGENNKF
ANFLMKVLKKKIKRAKKKEVEGDADEDEESEESSEEESSLESDEDASGSEDDVFDDSICPTNCDVSLFEL
ALQLREKRLDIEEALVEEKKIVDNLKKEYDTISKKVKVVATNLNAAEEALEAYQREKQQRLNELLVVIPL
KLHQIEYMEFGEVPEDLSGTLVFSNHSLDRLQERIVQLQEENAKQQKLNKECRERRKLLIREKREMAKTI
SKMEETVRELMISKFGRVIDLEALQTLSVNTTLEELKIKKLRKELSNAKELRMWEEKIAQVRWDLMMKTK
EHTKKLHQMNDLCLEKKKLDSRLNTLQNQQGNAFQGLRKADIVAKQKVTELVQTQLEKITALKEEIELLR
KKGGLLLPPITPKPKNEMKPMDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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