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Report for CCDS21088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21088.1 Public Mus musculus 7 Lrfn3 23 108 98 CCDS HistoryNCBI Gene:233067Re-query CCDS DB by CCDS ID:21088.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046351.6 ENSMUSP00000037616.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046351.6Link to Ensembl Protein Viewer:ENSMUSP00000037616.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046351Re-query CCDS DB by Protein ID:ENSMUSP00000037616
Original member Current member NCBI NM_175478.2 NP_780687.1 Accepted alive Link to Nucleotide Sequence:NM_175478.2Link to Protein Sequence:NP_780687.1Re-query CCDS DB by Nucleotide ID:NM_175478Re-query CCDS DB by Protein ID:NP_780687Link to BLAST:NP_780687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780687.1 626 Q8BLY3 626 100% 0 0

Chromosomal Locations for CCDS 21088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30355638 30356103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30359384 30360798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGCCGTCCTTCCACTACTCCTTTGCCTGCTACCGCTGGCCCCCGCCTCATCTCCACCCCAGCCGGCCA
TATCCAGCCCCTGTCCCCGCCGTTGCCGCTGCCAGACCCAGTCGATGCCCCTAAGCGTGTTGTGCCCAGG
GGCGGGCCTTCTATTCGTACCGCCATCACTGGATCGCCGCGCTGCAGAACTGCGCCTGGCAGACAACTTC
ATCGCGGCAGTGCGTCGTCGAGACCTGGCCAACATGACAGGCCTGCTGCATCTGAGCTTGTCTAGAAACA
CCATCCGCCATGTGGCAGCTGGCGCCTTCGCCGACCTACGTGCCCTGCGTGCCCTGCACCTAGATGGTAA
TAGACTGACCTCGCTGGGCGAGGGTCAGTTGCGCGGCTTAGTCAACTTGCGCCACCTCATCCTGAGCAAC
AACCAGCTAGCAGCCCTGGCAGCTGGTGCCCTAGACGACTGTGCCGAGACCCTGGAGGACCTCGATCTCT
CTTATAATAACCTTGAGCAGCTTCCCTGGGAGGCTTTAGGGCGCCTAGGCAACGTCAACACGTTGGGCCT
TGACCACAATTTGTTGGCTTCAGTGCCCGCTGGAGCCTTTTCCCGCCTGCACAAGTTGGCACGACTGGAC
ATGACCTCCAACCGCCTAACCACCATCCCTCCTGACCCACTCTTCTCACGTTTGCCACTGCTTGCCCGGC
CTCGAGGCTCGCCAGCCTCTGCTCTGGTGCTGGCCTTTGGGGGAAACCCCCTTCACTGCAACTGTGAGCT
GGTGTGGCTGCGACGCCTGGCTCGGGAGGACGACCTCGAGGCCTGTGCCTCGCCACCTGCTCTGGGGGGC
CGCTACTTCTGGGCTGTGGGTGAGGAGGAGTTTGTGTGTGAGCCACCTGTGGTGACCCACCGCTCACCTC
CCCTGGCAGTGCCCGCAGGTCGGCCAGCTGCCCTGCGATGCCGGGCAGTAGGGGACCCAGAGCCACGAGT
GCGTTGGGTATCACCCCAGGGTCGGCTGCTGGGCAACTCCAGCCGTGCTCGTGCCTTCCCTAATGGGACC
CTGGAGCTACTGGTCACTGAGCCGGAAGATGGCGGCACTTTCACTTGCATTGCAGCCAATGCCGCTGGCG
AGGCCACTGCTGCTGTTGAGCTGACCGTGGGTCCCCCTCCACCCCCCCAGCTAGCCAATAGCACCAGCTG
TGACCCCCCGCGGGACGGGGAACCCGATGCCCTCACCCCGCCCTCTGCGGCTTCAGCCTCCGCCAAAGTG
GCGGACACTGTGGCCCCTACCGACCGTGGCGTCCAAGTGACTGAGCATGGGGCCACAGCGGCTCTTGTTC
AGTGGCCAGATCAACGGCCTGTCCCAGGCATCCGCATGTACCAGATCCAGTACAACAGCTCGGCCGACGA
CATCCTTGTCTACAGGATGATCCCAGCGGACAGTCGCTCCTTCCTGCTGACCGATCTGGCGTCAGGCCGT
ACCTATGATCTATGTGTGCTCGCAGTCTATGAGGACAGCGCCACCGGGCTAACGGCCACGCGGCCAGTGG
GCTGCGCTCGGTTCTCCACGGAGCCCGCACTTCGGCCTTGTGCTGCACCGCACGCACCCTTCCTGGGCGG
CACCATGATCATAGCGCTGGGAGGTGTCATCGTCGCTTCTGTTCTGGTCTTCATCTTCGTGCTGCTTCTA
CGTTACAAGGTGCACGGAGGCCAGCCGCCCGGCAAGGCCAAGGCTACGGCACCTGTCAGCAGCGTTTGCT
CCCAGACCAACGGAGCGCTCGGGCCCGTGCCCAGTGCGCCTGCCCCTGAGCCTGCTGCACCCAGGGCCCA
TACTGTGGTCCAATTGGACTGTGAGCCCTGGGGGCCCAGTCACGAACCTGCAGGACCCTAG

Translation (626 aa):
MAVLPLLLCLLPLAPASSPPQPAISSPCPRRCRCQTQSMPLSVLCPGAGLLFVPPSLDRRAAELRLADNF
IAAVRRRDLANMTGLLHLSLSRNTIRHVAAGAFADLRALRALHLDGNRLTSLGEGQLRGLVNLRHLILSN
NQLAALAAGALDDCAETLEDLDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLD
MTSNRLTTIPPDPLFSRLPLLARPRGSPASALVLAFGGNPLHCNCELVWLRRLAREDDLEACASPPALGG
RYFWAVGEEEFVCEPPVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQGRLLGNSSRARAFPNGT
LELLVTEPEDGGTFTCIAANAAGEATAAVELTVGPPPPPQLANSTSCDPPRDGEPDALTPPSAASASAKV
ADTVAPTDRGVQVTEHGATAALVQWPDQRPVPGIRMYQIQYNSSADDILVYRMIPADSRSFLLTDLASGR
TYDLCVLAVYEDSATGLTATRPVGCARFSTEPALRPCAAPHAPFLGGTMIIALGGVIVASVLVFIFVLLL
RYKVHGGQPPGKAKATAPVSSVCSQTNGALGPVPSAPAPEPAAPRAHTVVQLDCEPWGPSHEPAGP


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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