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Report for CCDS18107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18107.1 Public Mus musculus 4 Fam221b 23 108 98 CCDS HistoryNCBI Gene:242408Re-query CCDS DB by CCDS ID:18107.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056474.6 ENSMUSP00000057398.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056474.6Link to Ensembl Protein Viewer:ENSMUSP00000057398.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056474Re-query CCDS DB by Protein ID:ENSMUSP00000057398
Original member Current member NCBI NM_175517.3 NP_780726.1 Accepted alive Link to Nucleotide Sequence:NM_175517.3Link to Protein Sequence:NP_780726.1Re-query CCDS DB by Nucleotide ID:NM_175517Re-query CCDS DB by Protein ID:NP_780726Link to BLAST:NP_780726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780726.1 487 Q8C627-1 487 100% 0 0

Chromosomal Locations for CCDS 18107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43659655 43659692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43660037 43660156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43660282 43660479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43660644 43660754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43665460 43665603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43665757 43666609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAAGCAAATAAGACCACAGAAGGCCCTCAGGACACTCAGGATGCAAAGGAACAGCCTTCTTTAGAGG
ACACCAACGCTGAAGACTTGTACGAGGCCACTACCCATGAAACTCCCTTACAGCCCTCCAGCTCACAGAA
ACATTTCCAGCCTCCAGAAATCCATCTTGAAACACCTGCCTCCCTGAATCCCGACACCAAGGGCGCTGAG
GGCCTCCAGGATTCTTCTGTCTCTGGAACTCCTCCTGTAAAGTCCAGTTCTTCTGGGCTTCTTTCCCTAC
CACCCCAACTGTCTCCTCAATCTGTGACCTCTCTAGAAAAAGCCATCGCTGAGATTCCTTTGGAGGAGTT
TGGCTATGACAGTCCTATCTCTAAAGTCAAAGAAGAACCTCTTCAGCTCTCACCAACAGCCAATATCCCA
GAGTATGGGAGTCCCATCTCTGAAGTCCAAAAGGAATCTCTTGAGGTCTCACCAACAGCCAATATCCCAG
AGTATGGGAGTCCCATCTCTGAAGTCCAAAAAGAACCTCTTGAGGTCTCGTCAACAGCCAATATCCCCAA
GTATGAGAGTCCCGTCTCCGAAGTCCAAAAAGAACCTCTTGAGGTCTCACCAACAGCCAGTATCCCTGAG
TCGTCCCATGAGCTTACCTCTGATAAAGTCCCACAGACCCAGGTCCCTGAATCTGAGCACTTTCCAAAGC
ACTCCTTTTCAGAATCACCAACCCAGGCCAAGGAGGACGAATCTACAAAGGAGGGGGAAGCAGGGGAAGA
TGAGCTGGCAGTGGGTACTAGTAAGATCCCTGCAGCCAAGCCTGGGCTTCGTGCAAAGAAGAAGAAGGAG
AAAAGAGCTGGTGGTGTTACAAGCCGCCCAGTGGTCCCTGCTAAGCGGGCAGAACTGGTGGAAATGGCTA
AGGCAGTGCACAGAGAGCAATTTGATGATCAGGTGAACAATCTTTTCCAGTGGGAGAAGGATTCAACCCT
GAAGGCCATCCAGACAGGTATCTACATTGGCTGGCGCTGCCCGCATTATTTATGGGACTGTTTCCGGATA
GGAGATGAGTCCAAGTGCTTTTGTGGACATTTGTTGAGAGAACACCAGATCATCTCAGATCTGTCAGTGC
CCTGCAGTGTGAGCCAGTGCAGGTGCCTCATGTTTTGTTTTATCCCGTCACGCCCAGAGGAGGTGGGTGA
GTTCTGGCTCAAGAAACGGGCCACCTTTGACCCCAAGGCCTGGAGGGCCCAATGTCGCTGTAAACACACT
CACGAAGAACATGCAGCCACCGGCGCTCATCCCTGCAGGCACCGTGGCTGTTTCTGCCCCTCTTTTGAGT
CTAATTTCCTCTGTGTGGCCTGCGACCGGCGCTGGGAAGAACATGAGACGTTCTTTGAGACTGGGGATAC
CAGGCGAAAAGGAAAGAGACCTTATGGAGCAAACAACATCAAGAACTGGCACAGGACTTACTGA

Translation (487 aa):
MEANKTTEGPQDTQDAKEQPSLEDTNAEDLYEATTHETPLQPSSSQKHFQPPEIHLETPASLNPDTKGAE
GLQDSSVSGTPPVKSSSSGLLSLPPQLSPQSVTSLEKAIAEIPLEEFGYDSPISKVKEEPLQLSPTANIP
EYGSPISEVQKESLEVSPTANIPEYGSPISEVQKEPLEVSSTANIPKYESPVSEVQKEPLEVSPTASIPE
SSHELTSDKVPQTQVPESEHFPKHSFSESPTQAKEDESTKEGEAGEDELAVGTSKIPAAKPGLRAKKKKE
KRAGGVTSRPVVPAKRAELVEMAKAVHREQFDDQVNNLFQWEKDSTLKAIQTGIYIGWRCPHYLWDCFRI
GDESKCFCGHLLREHQIISDLSVPCSVSQCRCLMFCFIPSRPEEVGEFWLKKRATFDPKAWRAQCRCKHT
HEEHAATGAHPCRHRGCFCPSFESNFLCVACDRRWEEHETFFETGDTRRKGKRPYGANNIKNWHRTY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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