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Report for CCDS25006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25006.1 Public Mus musculus 11 Or1e1 23 108 98 CCDS HistoryNCBI Gene:258925Re-query CCDS DB by CCDS ID:25006.1Re-query CCDS DB by GeneID:258925See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108465.3 ENSMUSP00000104105.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108465.3Link to Ensembl Protein Viewer:ENSMUSP00000104105.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108465Re-query CCDS DB by Protein ID:ENSMUSP00000104105
Original member Current member EBI ENSMUST00000120137.2 ENSMUSP00000114110.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120137.2Link to Ensembl Protein Viewer:ENSMUSP00000114110.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120137Re-query CCDS DB by Protein ID:ENSMUSP00000114110
Original member Current member NCBI NM_146923.2 NP_667134.2 Accepted alive Link to Nucleotide Sequence:NM_146923.2Link to Protein Sequence:NP_667134.2Re-query CCDS DB by Nucleotide ID:NM_146923Re-query CCDS DB by Protein ID:NP_667134Link to BLAST:NP_667134.2

Chromosomal Locations for CCDS 25006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73353755 73354699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCAGAAGGGAACCAAACTGTCATCTTCCAGTTCCTCCTCCTGGGCCTGCCCATCCCCACAGAGCATC
AGCAGCTGTACTATGCCCTGTTCCTGCTCATGTACCTCACCACCGTCCTGGGGAACCTCATCATCATCAT
CCTCATTCGACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATGCCCAAATTGCTGCAGAACATGCAGAGCCAGGACTCATCCATCACCT
ATGCAGGATGCCTGACACAAATGTACTTTTTCTTGCTCTTTGGAGACCTTGAGAGCTTCCTCCTTGTGGC
CATGGCCTATGACCGCTATGTGGCCATCTGCTTCCCCCTTCATTACATGAGCATCATGAGCCCCAGCCTC
TGTGTGAGTCTGGTGCTGCTGTCCTGGGTGCTGACCACTTTCCATGCCATGCTGCATACCCTGCTCATGG
CCAGATTGTCATTCTGTGAGGACAATGTGATCCCCCACTTTTTCTGTGACATGTCTGCTCTGCTGAAGCT
GTCCTGCTCTGACACCCACGTTAATGAATTGGTGATATTTGTCACAGGAGGCCTGATCCTTGTCATTCCA
TTTGTGCTCATCCTTGTGTCCTATGCACAAATTGTGTCCTCCATTCTCAAGGTCCCGTCTGCTCGAGGCA
TCCGTAAAGCCTTCTCCACCTGTGGGTCCCACCTGTCTGTGGTGTCACTGTTCTATGGGACAATCATTGG
TCTGTACTTATGTCCATCAGCTGATAACTCTACTGTGAAGGAAACTGTCATGGCCATGATGTACACAGTG
GTGACTCCCATGCTGAACCCCTTCATCTATAGCCTGAGGAACAGAGACATGAAGGGAGCATTGGCCAGAG
TTATTTGTAAGAAGAAAGTTTTCTTCTGTCTATGA

Translation (314 aa):
MAEGNQTVIFQFLLLGLPIPTEHQQLYYALFLLMYLTTVLGNLIIIILIRLDSHLHTPMYLFLSNLSFSD
LCFSSVTMPKLLQNMQSQDSSITYAGCLTQMYFFLLFGDLESFLLVAMAYDRYVAICFPLHYMSIMSPSL
CVSLVLLSWVLTTFHAMLHTLLMARLSFCEDNVIPHFFCDMSALLKLSCSDTHVNELVIFVTGGLILVIP
FVLILVSYAQIVSSILKVPSARGIRKAFSTCGSHLSVVSLFYGTIIGLYLCPSADNSTVKETVMAMMYTV
VTPMLNPFIYSLRNRDMKGALARVICKKKVFFCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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