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Report for CCDS15522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15522.1 Public Mus musculus 1 Or10j27 23 108 98 CCDS HistoryNCBI Gene:258759Re-query CCDS DB by CCDS ID:15522.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073663.2 ENSMUSP00000073345.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073663.2Link to Ensembl Protein Viewer:ENSMUSP00000073345.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073663Re-query CCDS DB by Protein ID:ENSMUSP00000073345
Original member Current member EBI ENSMUST00000200689.4 ENSMUSP00000143864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200689.4Link to Ensembl Protein Viewer:ENSMUSP00000143864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200689Re-query CCDS DB by Protein ID:ENSMUSP00000143864
Original member Current member NCBI NM_146764.2 NP_666975.1 Accepted alive Link to Nucleotide Sequence:NM_146764.2Link to Protein Sequence:NP_666975.1Re-query CCDS DB by Nucleotide ID:NM_146764Re-query CCDS DB by Protein ID:NP_666975Link to BLAST:NP_666975.1

Chromosomal Locations for CCDS 15522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173130283 173131215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAAGAGAGCCAACTGCACAGAGGTAAGAGAGTTTGTTTTCCAAGGCTTCTCCAATTTCCAAGAGCATC
AGCTCACACTCTTCATTATCTTCTTTGCCCTATATATCCTGACGCTGACTGGCAATGTCATCATTGTGAC
CATTATCCGCATTGACCACCACCTTCACACCCCCATGTATTTCTTCCTAAGTGTTCTCTCAACTTCAGAG
ACTTTCTATTCTCTGGTCATCATCCCACGCATGCTTGGCAGCCTTGTGGGTCTGAGCCAAACCATCTCCT
TGGAGTGCTGTGGGACTCAGCTATTTTTTTTCCTTGGATTTGGAATCACCAACTGTTTCCTGCTAGCAGT
CATGGGTTATGATCGCTATGTGGCCATCTGCAACCCGCTTCGCTATAGCGTCATCATGAATTGGAGGGTG
TGTGTCATTCTGGCATCTTCAGTCTGTGCCACAGGGTTCTTGCTCTCACTAGTCCAGGCTCTGGCCATAT
TCAGGCTGCCATTTTGCAACACACTGATTAAACATTTCTTCTGCGATGTCCGTCCTATTTTGGATCTGGC
CTGTACTGTGCCAGTCATCAATCAAGTCTTGACATTAGTACTCACTCTCATGGTCCTCACAGCCCCTGCC
ATTTTCCTATTTGTCTCCTATGCTCTTATTATTTCCACCATTCTCAAGATTGCCTCATCTGATGGCTGGA
AAAAAACATTTGCCACCTGCAGCTCCCATCTGACTGTAGTAGTGATTCACTATGGCTGTGCCTCCATTGT
ATACTTCAAGCCCAAATCAGAGAACAGTAAGGACCAAGACCAGCTGCTCTCAGTGACCTACACTGTAATA
ACACCTCTACTAAACCCTGTTGTGTATAGCCTAAGAAACAAAGAAGTCCAGGATGCTCTGCGGAAAGTGT
TGTGTAGGAAATCCCTTTCTTAG

Translation (310 aa):
MKRANCTEVREFVFQGFSNFQEHQLTLFIIFFALYILTLTGNVIIVTIIRIDHHLHTPMYFFLSVLSTSE
TFYSLVIIPRMLGSLVGLSQTISLECCGTQLFFFLGFGITNCFLLAVMGYDRYVAICNPLRYSVIMNWRV
CVILASSVCATGFLLSLVQALAIFRLPFCNTLIKHFFCDVRPILDLACTVPVINQVLTLVLTLMVLTAPA
IFLFVSYALIISTILKIASSDGWKKTFATCSSHLTVVVIHYGCASIVYFKPKSENSKDQDQLLSVTYTVI
TPLLNPVVYSLRNKEVQDALRKVLCRKSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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