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Report for CCDS37758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37758.1 Public Mus musculus 18 Brd8dc 23 108 98 CCDS HistoryNCBI Gene:271508Re-query CCDS DB by CCDS ID:37758.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056932.8 ENSMUSP00000054234.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056932.8Link to Ensembl Protein Viewer:ENSMUSP00000054234.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000056932Re-query CCDS DB by Protein ID:ENSMUSP00000054234
Original member Current member NCBI NM_177773.4 NP_808441.2 Accepted alive Link to Nucleotide Sequence:NM_177773.4Link to Protein Sequence:NP_808441.2Re-query CCDS DB by Nucleotide ID:NM_177773Re-query CCDS DB by Protein ID:NP_808441Link to BLAST:NP_808441.2

Chromosomal Locations for CCDS 37758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34580194 34580244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34580800 34580977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34584838 34584906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34586242 34586331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34592915 34593060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34595989 34596276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGTGTTTACAGGCGGGGTGTGAGTGGGTTTGGTTGGATTCTGGACAAGACTCTCATGATGACTCTGAGT
TGAGCAATGACTGCAGGTCCCTCCTCAGCTCTTGGGACTCCAGTCTGGATCTTGATGTGGGCAGCTGGAA
GGACACCGAGGATGCAGAGGCTGAGGCTGATGAGCCCAAGGAAAGCAGCCCAGAGAGAGGATGTAGCGAG
CTTCTTGTGGGTGACGTAGAAAGTGAAGAAGCTCGGGAAGAGGCAGAACAAGGCACACCCCAGGAACTGC
TCTCTGAGGGGGAGGCTCAGCAAGACTCAAAAGAGGATGATCAAGGTGAAGGGTCTGCTTCAGACGGAGA
AGACACGCCCCCTTTAGGTGAGGGGGAAGGCATCCGAGTTCAGGAAGCTCCCCTGGTGAATATCCTGTAC
AGCTCCTCACAACTGAATGACCTAAGCCAAGGTGATCCTATTCAGGATCAGTTCCTATTTAAGAAGACTC
TTTTGCAAGTCTGGAAGATGATTGCCAGTCACAGGTTTAGCAGCCCATTTCTAAAACCCGTGTCAGAGAA
GCAGGCTCCAGGATACAAGGATGTGGTGAAAAGACCCATGGACTTAACGACCCTGAAGAGGAATTTGTCT
AAGGGACGCATTCACACCATGGCTGAATTCCAGCGGGATCTGATGCTGATGTTCCAAAATGCCGTGATGT
ACAACGACTCTGATCATCACATATACCACATGGCTGTGGAGATGCAGCGGGAAGTCTTGGAGCAGATCCA
GGTTCTGAGTACTTGGCTGGATAAAAGGAAGGACTTGAGTAGTCTGGAATGA

Translation (273 aa):
MCLQAGCEWVWLDSGQDSHDDSELSNDCRSLLSSWDSSLDLDVGSWKDTEDAEAEADEPKESSPERGCSE
LLVGDVESEEAREEAEQGTPQELLSEGEAQQDSKEDDQGEGSASDGEDTPPLGEGEGIRVQEAPLVNILY
SSSQLNDLSQGDPIQDQFLFKKTLLQVWKMIASHRFSSPFLKPVSEKQAPGYKDVVKRPMDLTTLKRNLS
KGRIHTMAEFQRDLMLMFQNAVMYNDSDHHIYHMAVEMQREVLEQIQVLSTWLDKRKDLSSLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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