NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28188.1 Public Mus musculus 16 Gtpbp8 23 108 98 CCDS HistoryNCBI Gene:66067Re-query CCDS DB by CCDS ID:28188.1Re-query CCDS DB by GeneID:66067See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162512.7 ENSMUSP00000125352.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162512.7Link to Ensembl Protein Viewer:ENSMUSP00000125352.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162512Re-query CCDS DB by Protein ID:ENSMUSP00000125352
Original member Current member NCBI NM_025332.3 NP_079608.1 Accepted alive Link to Nucleotide Sequence:NM_025332.3Link to Protein Sequence:NP_079608.1Re-query CCDS DB by Nucleotide ID:NM_025332Re-query CCDS DB by Protein ID:NP_079608Link to BLAST:NP_079608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079608.1 285 Q9CY28-1 285 100% 0 0

Chromosomal Locations for CCDS 28188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 44739299 44739368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44740029 44740147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44742504 44742603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44743738 44743868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44745395 44745493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 44745999 44746337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCAGCGGCTAGGTTGAGTCATAGAATGGGAAGGCTCCTTGAGAAAGCGCCAGCACTGGGGCCTTGGA
CCCGGGTTTACAGCACGTCCCCTGCCTTCGCAGAAGTGCTAAGGCTGCCACAGAAACAGCTAACGAAGGT
AGTGTACCCGCTGCGGGAACTGGGGCAGCACCTCGCCGCGGACTCGGGGCCTGGCCTTATCGAACAGAGA
CTCTTCGACCCGAGCCTGGAGGACATCGGGCGGGCGGAGAGCATCTTTGAGGCCACCGCCCGGAACCGCA
TCGAGTACCTCAGCTCCGCCGTCCGCCTCGACCACGCCCCGAGTTTGCAGCAGCCGGAGGTGTGTTTCAT
AGGCCGAAGCAATGTTGGAAAATCCTCTTTGATAAAGGCCTTATTTTCCCTGGCCCCTGATGTAGAAGTC
AGGATCTCAAAAAAACCGGGGCACACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTACATTGG
TGGACATGCCAGGGTATGGCTATAGAGCACCCGAAGACTTCGTTGACATGGTAGAGACTTACCTAAAGGA
ACGAAATAATTTGAAGAGGACATTTTTATTAGTGGATAGTGTTGTTGGAATTACAAAATTAGACAATATT
GCCATAGAAATGTGTGAAGAATTTGCATTGCCTTATGTGATGATATTAACAAAAATCGACAAATCTTCCA
AGGGGTATCTTTTAAAACAAGTGCTCCAGATTCAGAAGTTTGTTAACACGCAGACACAAGGCTGTTTTCC
TCAGCTGTTTCCTATAAGTGCAGTGACCAATTCTGGAGTCCATCTGTTGAAATGCTTTATCGCAGATATA
ACAGGAAGTCTTAAGTAA

Translation (285 aa):
MAAARLSHRMGRLLEKAPALGPWTRVYSTSPAFAEVLRLPQKQLTKVVYPLRELGQHLAADSGPGLIEQR
LFDPSLEDIGRAESIFEATARNRIEYLSSAVRLDHAPSLQQPEVCFIGRSNVGKSSLIKALFSLAPDVEV
RISKKPGHTKKMNFFKVGKHFTLVDMPGYGYRAPEDFVDMVETYLKERNNLKRTFLLVDSVVGITKLDNI
AIEMCEEFALPYVMILTKIDKSSKGYLLKQVLQIQKFVNTQTQGCFPQLFPISAVTNSGVHLLKCFIADI
TGSLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH