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Report for CCDS28931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28931.1 Public Mus musculus 17 Vav1 23 108 98 CCDS HistoryNCBI Gene:22324Re-query CCDS DB by CCDS ID:28931.1Re-query CCDS DB by GeneID:22324See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005889.15 ENSMUSP00000005889.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005889.15Link to Ensembl Protein Viewer:ENSMUSP00000005889.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000005889Re-query CCDS DB by Protein ID:ENSMUSP00000005889
Original member Current member NCBI NM_011691.4 NP_035821.3 Accepted alive Link to Nucleotide Sequence:NM_011691.4Link to Protein Sequence:NP_035821.3Re-query CCDS DB by Nucleotide ID:NM_011691Re-query CCDS DB by Protein ID:NP_035821Link to BLAST:NP_035821.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035821.3 845 P27870 845 100% 0 0

Chromosomal Locations for CCDS 28931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57279198 57279401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57295982 57296098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57296552 57296610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57296700 57296768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57297049 57297157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57297246 57297341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57298772 57298840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57299101 57299204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57299842 57299941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57301181 57301276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57301861 57301929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57302074 57302160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57302265 57302350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57303015 57303147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57303834 57303943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57304824 57304925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305280 57305377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305459 57305481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305663 57305708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57306107 57306243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57307034 57307099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57309452 57309483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57311784 57311900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57315244 57315331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57318628 57318742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57324642 57324793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57327651 57327704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGAGCTCTGGCGACAGTGCACCCACTGGCTGATCCAGTGTCGGGTGCTGCCTCCCAGCCACCGTGTGA
CCTGGGAGGGGGCCCAGGTGTGTGAGCTGGCACAGGCACTGCGGGACGGTGTCCTCTTGTGCCAATTGCT
TAACAACCTGCTTCCCCAGGCCATTAATCTTCGCGAGGTTAACTTGCGGCCCCAGATGTCCCAGTTCCTT
TGTCTTAAGAACATTCGAACCTTCCTGTCTACTTGCTGTGAGAAGTTCGGCCTCAAGCGCAGTGAACTCT
TTGAGGCTTTTGACCTCTTCGATGTGCAGGACTTTGGAAAGGTCATCTACACCCTGTCTGCTCTGTCATG
GACACCCATTGCCCAGAACAAAGGAATCATGCCCTTCCCAACAGAGGACAGCGCTCTGAACGACGAAGAT
ATTTACAGTGGCCTTTCAGACCAGATTGATGACACCGCAGAGGAAGACGAGGACCTTTATGACTGCGTGG
AAAATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTTGGAGTCGGTGCCTACGCCACC
CAAGATGACAGAGTATGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACA
GACACACTGGGCTCCATCCAGCAGCACTTCATGAAGCCTCTGCAGCGATTCCTTAAGCCTCAAGACATGG
AGACCATCTTTGTCAACATTGAGGAGCTGTTCTCTGTGCATACCCACTTCTTAAAGGAACTGAAGGATGC
CCTGGCTGGCCCGGGAGCAACAACACTGTATCAGGTCTTCATCAAGTACAAGGAGAGGTTCCTGGTTTAT
GGCCGTTATTGCAGTCAGGTGGAGTCAGCCAGCAAGCACTTGGATCAAGTGGCCACAGCACGGGAGGATG
TGCAGATGAAGCTGGAGGAATGTTCTCAAAGAGCTAACAATGGCCGATTCACCCTACGGGATCTGCTGAT
GGTACCTATGCAGCGGGTGCTGAAGTACCACCTCCTTCTCCAGGAGCTAGTGAAACACACACAGGATGCT
ACAGAGAAGGAGAACCTGCGGTTGGCCCTGGACGCCATGAGGGACCTGGCACAGTGCGTGAACGAGGTCA
AGAGGGACAATGAAACCCTACGGCAGATCACAAACTTTCAGCTGTCCATTGAGAACCTGGACCAGTCTCT
GGCTAACTATGGCCGGCCCAAGATTGACGGTGAGCTCAAGATTACCTCAGTGGAGCGTCGCTCAAAGACA
GACAGGTATGCCTTCCTGCTGGACAAAGCACTGCTCATCTGTAAACGCCGCGGGGACTCTTACGACCTCA
AAGCCTCGGTGAACTTGCACAGCTTCCAAGTTCGAGATGACTCCTCCGGGGAGCGAGACAACAAGAAGTG
GAGCCATATGTTCCTTCTGATTGAGGATCAAGGCGCCCAGGGCTATGAGCTGTTCTTCAAGACTCGGGAG
CTGAAGAAGAAGTGGATGGAACAGTTCGAAATGGCCATCTCCAACATTTACCCAGAGAATGCTACAGCCA
ATGGGCATGATTTTCAGATGTTCTCCTTTGAGGAGACCACTTCCTGCAAGGCCTGCCAGATGTTACTCAG
AGGCACATTCTACCAGGGATATCGCTGTTACAGGTGCCGGGCACCTGCACACAAGGAGTGTCTGGGGAGA
GTGCCTCCCTGTGGTCGCCATGGGCAAGATTTCGCAGGAACCATGAAGAAGGACAAGCTCCATCGAAGGG
CCCAGGACAAGAAAAGGAATGAATTGGGTCTGCCTAAGATGGAAGTGTTTCAGGAATACTATGGGATCCC
TCCTCCACCTGGAGCCTTTGGGCCATTTTTACGGCTCAACCCTGGGGACATTGTGGAGCTCACTAAGGCA
GAGGCTGAGCACAACTGGTGGGAGGGAAGGAATACTGCTACAAATGAAGTCGGCTGGTTTCCCTGTAACA
GAGTGCATCCCTATGTCCACGGCCCTCCTCAGGACCTGTCTGTGCATCTCTGGTATGCGGGCCCTATGGA
ACGAGCAGGCGCTGAGGGCATCCTCACCAACCGTTCTGATGGGACCTATCTGGTGCGGCAGAGGGTGAAA
GATACAGCGGAGTTCGCCATCAGCATTAAGTATAACGTGGAGGTCAAGCATATTAAAATCATGACGTCAG
AGGGGTTGTACCGGATCACAGAGAAGAAGGCTTTCCGGGGCCTTCTGGAACTGGTAGAGTTTTATCAGCA
GAATTCCCTCAAAGATTGCTTCAAGTCGTTGGACACCACCTTGCAGTTTCCTTATAAGGAACCTGAGAGG
AGAGCCATCAGCAAGCCACCAGCTGGAAGCACCAAGTATTTTGGCACTGCCAAAGCCCGCTACGACTTCT
GTGCCCGGGACAGGTCGGAACTGTCCCTTAAGGAGGGTGATATCATCAAGATCCTCAATAAGAAGGGACA
GCAAGGCTGGTGGCGTGGGGAGATCTACGGCCGGATCGGCTGGTTCCCTTCTAACTATGTGGAGGAAGAC
TATTCCGAATATTGCTGA

Translation (845 aa):
MELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPQAINLREVNLRPQMSQFL
CLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIAQNKGIMPFPTEDSALNDED
IYSGLSDQIDDTAEEDEDLYDCVENEEAEGDEIYEDLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYT
DTLGSIQQHFMKPLQRFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVY
GRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDA
TEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKT
DRYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRE
LKKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR
VPPCGRHGQDFAGTMKKDKLHRRAQDKKRNELGLPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA
EAEHNWWEGRNTATNEVGWFPCNRVHPYVHGPPQDLSVHLWYAGPMERAGAEGILTNRSDGTYLVRQRVK
DTAEFAISIKYNVEVKHIKIMTSEGLYRITEKKAFRGLLELVEFYQQNSLKDCFKSLDTTLQFPYKEPER
RAISKPPAGSTKYFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEED
YSEYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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