NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18127.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18127.2 Public Mus musculus 4 Zcchc7 23 108 98 CCDS HistoryNCBI Gene:319885Re-query CCDS DB by CCDS ID:18127.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18127.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. The update adds three additional ZnF_C2HC (zinc finger) domains to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18127.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107824.8 ENSMUSP00000103454.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107824.8Link to Ensembl Protein Viewer:ENSMUSP00000103454.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107824Re-query CCDS DB by Protein ID:ENSMUSP00000103454
Original member Current member NCBI NM_138590.4 NP_613056.2 Accepted alive Link to Nucleotide Sequence:NM_138590.4Link to Protein Sequence:NP_613056.2Re-query CCDS DB by Nucleotide ID:NM_138590Re-query CCDS DB by Protein ID:NP_613056Link to BLAST:NP_613056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613056.2 541 B1AX39-1 541 100% 0 0

Chromosomal Locations for CCDS 18127.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44761874 44762474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44893533 44893570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44894916 44895041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44895819 44895989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44908451 44908486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44925975 44926070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44929118 44929235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44931036 44931475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTTTGGTGGCTATGAGACTATAGAAGCATTTGAAGATGATCTTTATCGTGATGATTCATCTAGTGAAC
TGAGTGTTGATAGTGAGGTGGAATTTCAGCTCTACAGCCAAGTCCATTATGCCCAGAGTATACATAATGC
CAACAAGGAGGAAGGATATGAGGAAAAGAACTGTGAGAATTCGGAAACAGTGAGTAGTCAACCAAATCAG
AAGAACTTAATCGTCCTTTCAGATAGTGAGGTCATCCAGCTATCTGATACATCAGAGGTCATCACATTAT
CTGATGAAGATAGTATTTATAGATGTAAAAGAAAAAATATTGAAGTCCAAGCGGAAGAAAAGACCCAGAG
CCCTGCTACTTCTCATTCTAATAAAGTGGCTCAGAAATGCAAGAGGAATAATAAGAAGCCTAAACCTGAA
GAGAGGCCAGGTGTGATCCGAGAGGTCATGATCATAGAGGTCAGTTCAAATGAGGAGGAAGAAAGTACCA
CTTCAGAGAACGAAAATGTGGAAAGCTGGATGCTCCTGGGGTCTGAGGAAGATGGTAAAGACAATGACAT
CCTTCTCAACTTGGTGGGGTGTGAGACCGCTGGTGCTGAAGATGATGTAAATTGGTTCATCAGTGACAAA
GACATCGAGGCCAAGATAGATAATAACAGATCATCTGGAAGGTGGAACAACCGATACTATTCAGTCAACA
AAAATGTCACCTGTAGAAATTGTGATAAACGTGGCCATTTGTCAAAAAACTGCCCCTTACCACAAAAAGT
CCGGGCCTGCTGCCTCTGCTCAGAGAGAGGACATCTCCAGTATGGCTGTCCAGCCCGTTACTGCTTAGAC
TGCTCTTTGCCCATGTCTTCCAACCACAGATGTTTTGAAAGATTGTCCTGGAGAAAACGATGTGACCGAT
GTGATATGATAGGCCACCATGCTGACGCTTGCCCAGAAATCTGGAGGCAGTATCACCTAACGACCAAACC
TGGACCACCAAAAAAGCCAAAGACCCCTTCTGGACAATCAGCGTTAGTGTATTGCTACAACTGTGCACAG
AAAGGCCATTATGGACATGAATGTACAGAGAGACGAATGTTTAACCAGACGTTTCCAACATCTCCATTCA
TATATTGCTATGATGGCAAATATGACATCCAGCAAAGGGATCGGAGAATAAAGCGAAAAGTCAAAGATCT
CAAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACAGATAAGAGGCGCCAC
CACGATATGAGAAAAAGCCGTTCCCCAAGAAAATACAGGAGGTGGCCTCGAGAAAATAAAGAAACACAGA
AAGAAAAGACCAGGAGTAGAGAAGGCAAGACGCACAGGAGGGGTCACCAGCCTCGGGGTGAGGATGAAGA
CTTCCCCAGGGGCTCAAAACCCAACGCCTCTGGCTGCGCTAACAACCAGAAGCCTTCTAAGTCCCTCCAC
CATGCATCCCATTACCACAGGCTGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGA
AAAGGAAGAGTACAGAGGACGGCAGCCATGATGATTTGTTTCTTATTAAGCAAAAGAAGAAGAAGCCTAA
GCCGAGTGGTCTCTGA

Translation (541 aa):
MFGGYETIEAFEDDLYRDDSSSELSVDSEVEFQLYSQVHYAQSIHNANKEEGYEEKNCENSETVSSQPNQ
KNLIVLSDSEVIQLSDTSEVITLSDEDSIYRCKRKNIEVQAEEKTQSPATSHSNKVAQKCKRNNKKPKPE
ERPGVIREVMIIEVSSNEEEESTTSENENVESWMLLGSEEDGKDNDILLNLVGCETAGAEDDVNWFISDK
DIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVRACCLCSERGHLQYGCPARYCLD
CSLPMSSNHRCFERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQ
KGHYGHECTERRMFNQTFPTSPFIYCYDGKYDIQQRDRRIKRKVKDLKKNGDFPRQFKRPHVEETDKRRH
HDMRKSRSPRKYRRWPRENKETQKEKTRSREGKTHRRGHQPRGEDEDFPRGSKPNASGCANNQKPSKSLH
HASHYHRLREERLLRESKRSKPKKRKSTEDGSHDDLFLIKQKKKKPKPSGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH