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Report for CCDS90717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90717.1 Public Mus musculus X Smim10l2a 23 108 98 CCDS HistoryNCBI Gene:320237Re-query CCDS DB by CCDS ID:90717.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 90717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068106.4 ENSMUSP00000066705.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068106.4Link to Ensembl Protein Viewer:ENSMUSP00000066705.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068106Re-query CCDS DB by Protein ID:ENSMUSP00000066705
Original member Current member NCBI NM_183030.2 NP_898851.1 Accepted alive Link to Nucleotide Sequence:NM_183030.2Link to Protein Sequence:NP_898851.1Re-query CCDS DB by Nucleotide ID:NM_183030Re-query CCDS DB by Protein ID:NP_898851Link to BLAST:NP_898851.1

Chromosomal Locations for CCDS 90717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56374637 56374873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGGCGGTGACTGCGGCCCTCTCTGCTGCTGCTGCGGCGGCGGCCCTGTCTGGCCTGGCAGTGCGACTGT
CGCGTTGGGCGGCGACACGCAGCTCCTACGGTGCGTTCTGCAAGGGGCTCACGCGCACGCTACTCACCTT
CTTCGACCTAGCCTGGCGCCTGCGCGTGAACTTCCCCTACTTCTACATGGTGGCCTCAGTGATGCTCAAC
GTCCGCCTGCAGGTGCGGATCGAGTGA

Translation (78 aa):
MAVTAALSAAAAAAALSGLAVRLSRWAATRSSYGAFCKGLTRTLLTFFDLAWRLRVNFPYFYMVASVMLN
VRLQVRIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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