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Report for CCDS25617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25617.1 Public Mus musculus 11 Cd300ld3 23 108 98 CCDS HistoryNCBI Gene:382551Re-query CCDS DB by CCDS ID:25617.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092459.3 ENSMUSP00000090116.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092459.3Link to Ensembl Protein Viewer:ENSMUSP00000090116.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092459Re-query CCDS DB by Protein ID:ENSMUSP00000090116
Original member Current member NCBI NM_199201.2 NP_954671.1 Accepted alive Link to Nucleotide Sequence:NM_199201.2Link to Protein Sequence:NP_954671.1Re-query CCDS DB by Nucleotide ID:NM_199201Re-query CCDS DB by Protein ID:NP_954671Link to BLAST:NP_954671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954671.1 245 Q6SJQ5 245 100% 0 0

Chromosomal Locations for CCDS 25617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115042131 115042323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115044086 115044248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115045766 115046107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115048256 115048295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGTGGCAGTTCCCAGCTCTGCTCTTCCTTTTCCTCCCAGGCTGCTGCACGGCTCAGGATCCAGTCACAG
GTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAGTGCAGTGCAGATATGACTCAGGCTGGAA
GGATTACAAGAAGTACTGGTGCCGAGGAGCTTATTGGAAATCATGTGAGATTCTCGTTGAAACCGATGCA
TCAGAGCAGTTGGTGAAGGAAAACCGTGTGTCCATCAGGGACGACCAGACAGACTTCATCTTCACAGTGA
CCATGGAAGACCTGAGGATGAGCGATGCTGACATTTACTGGTGTGGAATTACGAAAGCTGGAACTGATCC
CATGTTTAAAGTTAACGTGAACATTGACCCAGAAATTTCAACTACAATCATGACGACGACAGCCACAGTT
CTGCCATCCACAGTTCTGACATCCACAGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGG
AGAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAGAACTCTCTCTTCATCTGGTCCCTGTTGAGCAG
CATCTCCTTCTTGCTGATGGTCTTTGTGGTGGTTCCCCTCCTCCTGAGCATGCTCAGTGCTGTTCTCTGG
GTGAACAGGCCTCAGAGACACTATGGGGGAGGTGAAATTGGCCTGGTGGAAACCCATAGATCTGATGCCC
TGGACGGAGAGAAACACTTCCCAGGAGATGAAAAATAA

Translation (245 aa):
MWQFPALLFLFLPGCCTAQDPVTGPEEVSGQEQGSLTVQCRYDSGWKDYKKYWCRGAYWKSCEILVETDA
SEQLVKENRVSIRDDQTDFIFTVTMEDLRMSDADIYWCGITKAGTDPMFKVNVNIDPEISTTIMTTTATV
LPSTVLTSTVLTSTVLTPTTPTTESIGTENIGQVTQNSLFIWSLLSSISFLLMVFVVVPLLLSMLSAVLW
VNRPQRHYGGGEIGLVETHRSDALDGEKHFPGDEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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