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Report for CCDS42280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42280.1 Public Homo sapiens 17 SPECC1 24 110 108 CCDS HistoryNCBI Gene:92521Re-query CCDS DB by CCDS ID:42280.1Re-query CCDS DB by GeneID:92521See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395529.7 ENSP00000378900.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395529.7Link to Ensembl Protein Viewer:ENSP00000378900.3Re-query CCDS DB by Nucleotide ID:ENST00000395529Re-query CCDS DB by Protein ID:ENSP00000378900
Original member Current member EBI ENST00000679049.1 ENSP00000503499.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679049.1Link to Ensembl Protein Viewer:ENSP00000503499.1Re-query CCDS DB by Nucleotide ID:ENST00000679049Re-query CCDS DB by Protein ID:ENSP00000503499
Original member Current member EBI ENST00000676570.1 ENSP00000503507.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676570.1Link to Ensembl Protein Viewer:ENSP00000503507.1Re-query CCDS DB by Nucleotide ID:ENST00000676570Re-query CCDS DB by Protein ID:ENSP00000503507
Original member Current member EBI ENST00000681593.1 ENSP00000504996.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681593.1Link to Ensembl Protein Viewer:ENSP00000504996.1Re-query CCDS DB by Nucleotide ID:ENST00000681593Re-query CCDS DB by Protein ID:ENSP00000504996
Original member Current member EBI ENST00000680572.1 ENSP00000505383.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680572.1Link to Ensembl Protein Viewer:ENSP00000505383.1Re-query CCDS DB by Nucleotide ID:ENST00000680572Re-query CCDS DB by Protein ID:ENSP00000505383
Original member Current member EBI ENST00000680374.1 ENSP00000505715.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680374.1Link to Ensembl Protein Viewer:ENSP00000505715.1Re-query CCDS DB by Nucleotide ID:ENST00000680374Re-query CCDS DB by Protein ID:ENSP00000505715
Original member Current member NCBI NM_152904.4 NP_690868.3 Accepted alive Link to Nucleotide Sequence:NM_152904.4Link to Protein Sequence:NP_690868.3Re-query CCDS DB by Nucleotide ID:NM_152904Re-query CCDS DB by Protein ID:NP_690868Link to BLAST:NP_690868.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690868.3 790 Q5M775-2 790 100% 0 0

Chromosomal Locations for CCDS 42280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20096652 20096798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20110427 20110562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20204333 20205912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20227413 20227620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20231758 20231831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20232200 20232405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20236860 20236881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGCGGAGTGCAGCCAAGCCCTGGAACCCAGCCATCAGAGCAGGGGGCCACGGCCCAGACCGGGTGCGGC
CTCTGCCTGCAGCCTCTTCCGGCATGAAGAGTTCTAAGTCTTCAACTTCCTTGGCTTTTGAGTCCCGACT
CAGCAGGCTCAAGAGGGCCAGCAGTGAGGACACGCTCAACAAGCCAGGAAGTACCGCTGCATCGGGGGTG
GTTCGCCTGAAGAAGACCGCCACTGCCGGAGCCATCTCGGAGCTCACGGAGAGCCGCCTGAGGAGCGGCA
CAGGGGCCTTTACAACAACTAAACGGACAGGCATTCCAGCCCCACGGGAATTTTCAGTAACTGTCTCAAG
AGAGAGGTCTGTGCCACGTGGTCCCTCCAACCCCAGGAAATCAGTGTCCAGTCCAACTTCTTCCAACACT
CCCACTCCTACGAAACACCTGAGGACCCCTTCCACAAAGCCCAAGCAAGAGAATGAAGGTGGAGAAAAGG
CTGCGCTTGAGTCCCAAGTTCGGGAACTTTTGGCAGAAGCCAAAGCAAAAGATAGTGAAATTAACAGGCT
TCGAAGTGAACTAAAGAAATACAAAGAGAAAAGGACTCTGAACGCTGAGGGGACTGATGCTTTGGGCCCA
AATGTCGATGGAACATCAGTCTCCCCAGGTGACACGGAACCTATGATAAGAGCTCTTGAGGAGAAGAACA
AGAACTTTCAGAAAGAGCTTTCCGATCTAGAGGAAGAAAACCGGGTCCTGAAGGAGAAACTGATCTATCT
TGAGCACTCCCCAAATTCAGAAGGGGCAGCAAGTCACACTGGCGACAGCAGCTGCCCAACATCCATAACT
CAAGAGTCAAGCTTCGGAAGCCCAACTGGAAATCAGATGTCCAGTGACATTGATGAGTATAAAAAAAACA
TACATGGAAATGCATTACGGACATCAGGCTCCTCAAGTAGCGATGTTACCAAAGCTTCTTTGTCGCCAGA
TGCTTCCGACTTTGAGCACATTACAGCAGAGACACCCTCAAGGCCCCTGTCCTCCACCAGTAACCCCTTT
AAGAGTTCAAAGTGTTCTACTGCTGGGAGTTCCCCAAACAGCGTAAGTGAATTGTCCCTGGCTTCCCTCA
CAGAGAAGATACAAAAGATGGAAGAAAACCACCATAGCACTGCAGAAGAACTACAGGCTACTCTACAAGA
ATTATCAGACCAGCAACAAATGGTACAGGAATTGACAGCTGAAAATGAGAAGCTGGTGGATGAAAAGACG
ATTTTAGAGACATCCTTTCATCAGCATCGAGAGAGGGCAGAGCAGCTAAGTCAAGAAAATGAGAAGCTGA
TGAATCTTTTACAAGAGCGAGTAAAGAATGAAGAGCCCACCACTCAGGAAGGAAAAATTATTGAACTGGA
GCAGAAGTGCACAGGTATTCTTGAACAGGGCCGCTTTGAAAGAGAGAAGCTACTCAACATTCAGCAGCAG
TTGACCTGTAGCTTGCGGAAGGTTGAGGAAGAAAACCAAGGAGCTTTAGAAATGATTAAACGTCTGAAGG
AAGAAAATGAAAAACTGAATGAGTTTCTAGAACTGGAACGGCATAATAATAACATGATGGCCAAAACTTT
GGAAGAGTGTAGAGTTACCTTGGAAGGGCTAAAAATGGAGAATGGATCTTTGAAGTCTCATTTGCAGGGT
GAGAAGCAGAAAGCCACAGAGGCCAGTGCTGTGGAGCAGACGGCAGAGAGCTGCGAAGTTCAAGAAATGT
TGAAAGTAGCCCGAGCAGAGAAAGATCTACTGGAACTGTCTTGCAATGAGCTCAGACAAGAATTACTAAA
GGCAAACGGTGAAATTAAACATGTTTCCAGTCTGCTGGCCAAGGTGGAAAAGGATTATTCATACCTGAAG
GAGATATGTGATCACCAAGCCGAACAGCTGAGCAGAACCAGCCTAAAGCTGCAAGAAAAAGCATCAGAGA
GTGATGCAGAGATCAAAGACATGAAAGAAACCATATTTGAATTGGAAGATCAGGTGGAACAGCACCGGGC
TGTCAAGTTACACAATAATCAACTCATCAGTGAGCTAGAAAGTAGTGTGATCAAGCTGGAGGAACAGAAG
TCAGACCTGGAGAGGCAGCTGAAGACTCTGACCAAGCAGATGAAGGAGGAGACCGAGGAATGGAGGCGGT
TCCAGGCGGATCTGCAGACCGCAGTGGTGGTGGCCAATGACATCAAGTGTGAGGCCCAGCAGGAGCTGCG
CACCGTGAAGAGGAAACTGCTGGAGGAGGAGGAGAAGAATGCCCGGTTGCAGAAGGAGCTGGGGGATGTG
CAGGGCCACGGCAGGGTGGTCACCAGCAGAGCCGCCCCTCCCTCCCTGGGCTCTGTCAGCTAG

Translation (790 aa):
MRSAAKPWNPAIRAGGHGPDRVRPLPAASSGMKSSKSSTSLAFESRLSRLKRASSEDTLNKPGSTAASGV
VRLKKTATAGAISELTESRLRSGTGAFTTTKRTGIPAPREFSVTVSRERSVPRGPSNPRKSVSSPTSSNT
PTPTKHLRTPSTKPKQENEGGEKAALESQVRELLAEAKAKDSEINRLRSELKKYKEKRTLNAEGTDALGP
NVDGTSVSPGDTEPMIRALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSIT
QESSFGSPTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTSNPF
KSSKCSTAGSSPNSVSELSLASLTEKIQKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKT
ILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIELEQKCTGILEQGRFEREKLLNIQQQ
LTCSLRKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKMENGSLKSHLQG
EKQKATEASAVEQTAESCEVQEMLKVARAEKDLLELSCNELRQELLKANGEIKHVSSLLAKVEKDYSYLK
EICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESSVIKLEEQK
SDLERQLKTLTKQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGDV
QGHGRVVTSRAAPPSLGSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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