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Report for CCDS40564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40564.1 Public Mus musculus 9 Rp9 23 108 98 CCDS HistoryNCBI Gene:55934Re-query CCDS DB by CCDS ID:40564.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034763.9 ENSMUSP00000034763.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034763.9Link to Ensembl Protein Viewer:ENSMUSP00000034763.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034763Re-query CCDS DB by Protein ID:ENSMUSP00000034763
Original member Current member NCBI NM_018739.2 NP_061209.1 Accepted alive Link to Nucleotide Sequence:NM_018739.2Link to Protein Sequence:NP_061209.1Re-query CCDS DB by Nucleotide ID:NM_018739Re-query CCDS DB by Protein ID:NP_061209Link to BLAST:NP_061209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061209.1 213 P97762 213 100% 0 0

Chromosomal Locations for CCDS 40564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22448656 22448854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22449802 22449863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22453779 22453870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22457373 22457502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22458711 22458741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22468074 22468201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGTCGTCCGGGGCCGGGTCTCGGCGGCCGCGGGAGCCGCCGGAGCACGAGCTGCAGCGGCGGCGGGAGC
AGAAACGGCGGCGGCACGACGCGCAGCAGCTGCAGCAGCTCAAGCACCTGGAGTCCTTTTATGAGAAACC
TCCTCCTGGGTTTATAAAGGAGGACGAGACGAAGCCAGAAGACTGTATACCAGATGTGCCCGGCAATGAA
CATGCCAGGGAGTTTCTGGCTCACGCTCCGACTAAAGGACTGTGGATGCCCCTGGGGAGAGAGGTCAAAG
TTATGCAATGTTGGCGTTGCAAACGGTATGGCCATCGAACAGGCGACAAAGAATGCCCTTTCTTTATCAA
AGGCAACCAGAAGTTAGAACAGTTCCGAGTCGCACATGAAGATCCTATGTACGACATCATTCGCGAGAAT
AAAAGACATGAAAAGGATGTAAGGATCCAGCAGTTAAAGCAGTTACTGGAGGACTCCACCTCAGATGACG
ACGGGAGCAGCTCCAGCTCCTCGGGGGACAGAGAGAAGCGCAAGAAAAGGAAGAAAAAAGAAAAGCACAA
GAAACGCAAGAAGGAGAAGAAAAAGAAGAAGAAACGGAAGCACAAGGCTTCCAAGTCCAGTGAGAGCTCT
GACTCAGAGTGA

Translation (213 aa):
MSSGAGSRRPREPPEHELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGFIKEDETKPEDCIPDVPGNE
HAREFLAHAPTKGLWMPLGREVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIREN
KRHEKDVRIQQLKQLLEDSTSDDDGSSSSSSGDREKRKKRKKKEKHKKRKKEKKKKKKRKHKASKSSESS
DSE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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