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Report for CCDS48268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48268.1 Under review, update Mus musculus 1 Kctd18 23 108 98 CCDS HistoryNCBI Gene:51960Re-query CCDS DB by CCDS ID:48268.1Re-query CCDS DB by GeneID:51960See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164963.7 ENSMUSP00000130952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164963.7Link to Ensembl Protein Viewer:ENSMUSP00000130952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164963Re-query CCDS DB by Protein ID:ENSMUSP00000130952
Original member NCBI NM_001159865.1 NP_001153337.1 Updated not alive Link to Nucleotide Sequence:NM_001159865.1Link to Protein Sequence:NP_001153337.1Re-query CCDS DB by Nucleotide ID:NM_001159865Re-query CCDS DB by Protein ID:NP_001153337
Current member NCBI NM_001159865.2 NP_001153337.2 Pending alive Link to Nucleotide Sequence:NM_001159865.2Link to Protein Sequence:NP_001153337.2Re-query CCDS DB by Nucleotide ID:NM_001159865Re-query CCDS DB by Protein ID:NP_001153337Link to BLAST:NP_001153337.2

Chromosomal Locations for CCDS 48268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 57956328 57956820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57959143 57959245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57967497 57967689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGCTTAAGGCAGAACTTCAGGCATCGAAGGGAGCAATGGCAGGCCATGAAGCAGAAGACGTGCTAGATA
TCCTTCGGCTGAATGTGGGTGGCTGCATCTACACAGCCCGGCGAGAGTCTTTGTGCCGCTTTAAGGATTC
TATGCTGGCATCTATGTTTAGTGGTCGTTTCCCTCTAAAAACAGATGAATCTGGGGTAAGCTACTGGCGT
GTGCCTCATGAGCTGATAGAGTGTTGGACTTTGGAAGAACGGCCTTTACACGGAAGCCTGCGTCATATGG
CCCCAATTCGAAAGAGGCGGCTGATAGCCCTCAGGGAAGAGGATGAAGGTGTGAACTGTAAGACTGGTCC
TAAGCCAGTCAGATTTTTGGGCCCTTCTACAAGTACCCAAATTAAAGTCAAGAACTCTGCTTCAGTGAGG
GTGTCACCTGCCAATGCTGCCCAGATCTCCTCTCAGGCTACAGCAAACCGCTCTCACAGAGGCAGCTGTG
GAAAGGCAGCCCAGTGCTCTGTGGCCACAGGGGCTTCTGGGCATGCTCCCGCTTCCCCCGATGCCCAGAG
CTCTGAAAACCAAGCCACACACCCACCTCCAGCCAAGGTGCTCCTCTCTGAAAAGAAGTCTCCACCCCCT
CGAGTGATCAAGCTGAGGAGGACTCCACTGCGTGGGGGGCCTTCCCTGCCCACCGCCTCAGCAGGGGGCC
AGGCCTGCTTCCCCCAGCCACCCTCTCTAGAAGCTTCCAGCAGTTTGGGTGTGCAGATGGAGACCAGGAA
AGACCAGCCTGATGGGTAA

Translation (262 aa):
MLKAELQASKGAMAGHEAEDVLDILRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGVSYWR
VPHELIECWTLEERPLHGSLRHMAPIRKRRLIALREEDEGVNCKTGPKPVRFLGPSTSTQIKVKNSASVR
VSPANAAQISSQATANRSHRGSCGKAAQCSVATGASGHAPASPDAQSSENQATHPPPAKVLLSEKKSPPP
RVIKLRRTPLRGGPSLPTASAGGQACFPQPPSLEASSSLGVQMETRKDQPDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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