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Report for CCDS15074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15074.1 Public Mus musculus 1 Chpf 23 108 98 CCDS HistoryNCBI Gene:74241Re-query CCDS DB by CCDS ID:15074.1Re-query CCDS DB by GeneID:74241See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079205.13 ENSMUSP00000078199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079205.13Link to Ensembl Protein Viewer:ENSMUSP00000078199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079205Re-query CCDS DB by Protein ID:ENSMUSP00000078199
Original member Current member NCBI NM_001001566.3 NP_001001566.1 Accepted alive Link to Nucleotide Sequence:NM_001001566.3Link to Protein Sequence:NP_001001566.1Re-query CCDS DB by Nucleotide ID:NM_001001566Re-query CCDS DB by Protein ID:NP_001001566Link to BLAST:NP_001001566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001566.1 774 Q6IQX7-1 774 100% 0 0

Chromosomal Locations for CCDS 15074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75474970 75476226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75476560 75476739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75477245 75477818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75478792 75479105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGCGGGCGTCGCTGCTGCTGTCCGTGCTGCGGCCCGCGGGGCCCGTGGCCGTGGGCATCTCTCTGGGCT
TCACCCTGAGCCTGCTCAGCGTCACCTGGGTGGAGGAGCCTTGCGGACCCGGGCCGCCCCAACCCGGAGA
CTCTGAGCTGCCGCCGCGCGGCAACACCAACGCGGCGCGCCGGCCCAACTCGGTGCAGCCCGGATCCGAG
CGCGAGAGGCCCGGGGCCGGCGCAGGCACCGGTGAGAGCTGGGAGCCTCGTGTCTTGCCCTACCATCCCG
CGCAGCCAGGCCAGGCCACCAAGAAGGCCGTCAGAACTCGGTATATCAGCACGGAGCTGGGCATCAGGCA
GAAGCTTCTGGTGGCAGTGCTGACCTCACAAGCCACGTTGCCTACACTGGGTGTGGCTGTAAACCGAACT
CTGGGACACCGACTGGAGCATGTAGTGTTCCTGACCGGTGCGAGGGGCCGCCGGACACCTTCAGGCATGG
CGGTGGTGGCACTGGGCGAAGAGAGGCCCATCGGACACCTGCACCTGGCGCTGCGCCACCTGCTGGAGCA
ACACGGCGATGACTTTGACTGGTTTTTCCTAGTGCCTGATGCCACCTATACTGAAGCGCATGGACTGGAC
CGCCTAGCTGGCCACCTCAGCCTTGCTTCAGCAACCCATCTCTATCTTGGCCGGCCGCAGGACTTCATCG
GTGGAGATACTACCCCAGGCCGCTACTGCCACGGGGGCTTTGGAGTCTTGCTCTCTCGCACACTGCTACA
GCAACTGCGCCCCCACCTGGAAAGCTGCCGCAACGACATCGTCAGTGCTCGCCCGGATGAGTGGTTGGGC
CGCTGCATCCTTGATGCCACAGGCGTGGGCTGTACTGGTGACCACGAGGGAATGCACTACAACTACCTGG
AACTGAGCCCCGGGGAGCCTGTGCAGGAGGGGGACCCTCGTTTCCGCAGCGCCTTGACAGCCCATCCCGT
GCGTGACCCTGTGCACATGTACCAGCTGCACAAAGCTTTTGCCCGCGCTGAGCTGGACCGCACGTACCAG
GAGATTCAAGAATTGCAGTGGGAGATCCAGAATACCAGCCGACTGGCTGCTGATGGGGAGAGAGCCTCTG
CCTGGCCAGTGGGCATCCCAGCACCGTCTCGCCCTGCCTCACGCTTTGAGGTTCTGCGCTGGGACTACTT
CACAGAACAATACGCGTTCTCCTGCGCCGATGGCTCTCCCCGCTGCCCGTTGCGTGGGGCCGACCAGGCT
GATGTGGCTGACGTCCTGGGGACAGCCTTAGAGGAGCTCAACCGCCGTTACCAGCCAGCGCTGCAGCTCC
AGAAGCAACAGCTGGTGAACGGCTACCGGCGTTTTGATCCAGCCCGAGGCATGGAGTACACACTAGACCT
GCAGCTGGAAGCGCTGACACCCCAGGGTGGCCGCTGGCCCCTCACCCGCAGGGTGCAGCTCCTTCGGCCC
TTGAGCCGAGTGGAGATCTTGCCTGTACCCTATGTCACCGAGGCTTCTCGGCTCACTGTGCTACTGCCGC
TGGCTGCAGCGGAACGAGACCTGGCTTCTGGCTTCTTAGAAGCCTTTGCCACTGCAGCCCTGGAACCTGG
TGATGCAGCAGCCTTGACCCTGCTGCTGCTGTATGAGCCACGCCAGGCCCAGCGGGCAGCCCACTCAGAC
GTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTAGAGCGGCGTTTCCCTGGTGCCCGGGTGCCCTGGC
TCAGTGTGCAGACAGCAGCGCCCTCTCCACTGCGTCTCATGGATCTGCTGTCCAAGAAGCACCCACTAGA
CACTCTGTTCCTGCTGGCCGGGCCAGACACGGTACTCACACCTGATTTCCTGAACCGCTGCCGCATGCAT
GCCATCTCTGGCTGGCAGGCCTTCTTCCCCATGCACTTCCAGGCCTTCCACCCTGCTGTGGCTCCACCTC
AGGGCCCTGGGCCACCAGAGCTGGGCCGTGACACCGGTCACTTTGATCGCCAGGCTGCCAGTGAGGCATG
CTTCTACAACTCCGACTATGTGGCGGCCCGTGGCCGGCTGGTGGCGGCCTCGGAGCAGGAGGAGGAGCTG
CTGGAGAGCCTGGATGTGTACGAGTTGTTTCTGCGCTTCTCCAACTTGCACGTGCTGAGAGCAGTAGAGC
CAGCCTTGCTGCAGCGCTACCGGGCCCAGCCGTGCAGTGCACGGCTCAGTGAAGACCTTTACCACCGCTG
TCGCCAGAGCGTACTTGAGGGCCTTGGCTCCCGCACCCAGCTTGCCATGCTGCTCTTTGAGCAGGAACAG
GGGAACAGCACCTAA

Translation (774 aa):
MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGSE
RERPGAGAGTGESWEPRVLPYHPAQPGQATKKAVRTRYISTELGIRQKLLVAVLTSQATLPTLGVAVNRT
LGHRLEHVVFLTGARGRRTPSGMAVVALGEERPIGHLHLALRHLLEQHGDDFDWFFLVPDATYTEAHGLD
RLAGHLSLASATHLYLGRPQDFIGGDTTPGRYCHGGFGVLLSRTLLQQLRPHLESCRNDIVSARPDEWLG
RCILDATGVGCTGDHEGMHYNYLELSPGEPVQEGDPRFRSALTAHPVRDPVHMYQLHKAFARAELDRTYQ
EIQELQWEIQNTSRLAADGERASAWPVGIPAPSRPASRFEVLRWDYFTEQYAFSCADGSPRCPLRGADQA
DVADVLGTALEELNRRYQPALQLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRWPLTRRVQLLRP
LSRVEILPVPYVTEASRLTVLLPLAAAERDLASGFLEAFATAALEPGDAAALTLLLLYEPRQAQRAAHSD
VFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMH
AISGWQAFFPMHFQAFHPAVAPPQGPGPPELGRDTGHFDRQAASEACFYNSDYVAARGRLVAASEQEEEL
LESLDVYELFLRFSNLHVLRAVEPALLQRYRAQPCSARLSEDLYHRCRQSVLEGLGSRTQLAMLLFEQEQ
GNST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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