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Report for CCDS78655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78655.1 Public Mus musculus 1 Mterf4 23 108 98 CCDS HistoryNCBI Gene:69821Re-query CCDS DB by CCDS ID:78655.1Re-query CCDS DB by GeneID:69821See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112944.7 ENSMUSP00000108566.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112944.7Link to Ensembl Protein Viewer:ENSMUSP00000108566.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112944Re-query CCDS DB by Protein ID:ENSMUSP00000108566
Original member Current member NCBI NM_001310756.1 NP_001297685.1 Accepted alive Link to Nucleotide Sequence:NM_001310756.1Link to Protein Sequence:NP_001297685.1Re-query CCDS DB by Nucleotide ID:NM_001310756Re-query CCDS DB by Protein ID:NP_001297685Link to BLAST:NP_001297685.1

Chromosomal Locations for CCDS 78655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93301378 93301584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93302718 93302902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93304608 93305106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93305825 93305845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCTTCGCTGGGAAGGCAGGTTCCTGAGTGGCATCGTCTACTGGCCCTCTCCTGGGCCTGTTTGGTTA
GG
CAGACCCCTCATCTCAGAGAACAGAAACAGATGAGCCCTTCTTTGTCTTGCAAACTGACTACAGTGCC
C
GGTAGAGGAAGCTTTCAAGAGTTTTCCAGCATTACACCCCAAAAGTACATGCAGGAACCAGAAAACAGG
ACA
CGACTTGTTCAGTGTCTTCATGAGGAACAGAAGCCTTGTGTGGATCCTGAGTCCTTGGAGCCTGAAA
AG
GTCATCCGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCACATTCACAGCTTGTTTAGTATACAGCC
A
AGTGTCCATCCTCAACAGTTGCTGGGTATAGTTTCAGAACTCCTACTCTTGGGGTTGAACCCAGAGCCT
GTA
TTTAATGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTAGCATGCAGATGAAGAGGCGTTCCA
GT
TACCTTCGGAAGCTTGGCCTTGGAGAAGGGAAACTGAAGCGGGTGCTGTCCGTTTGCCCTGAGGTTTT
C
ACCATGCATCAGCGGGACATTGACCGAGTTGTGAAGGTCCTCAGGGAGAAGTGCTTGTTCACGGCACAG
CAC
ATCACAGACGTTCTGCACAGATGCCCCACTGTTTTGCAGGAGGACCCCAACGAGCTAGAATACAAAT
TC
CAGCCTGTTCCTCTGTCGAGGAGTTTCAAGTTTTTAAAAAACTCTTGGATCAAGAGGAGGAGGAGGAG
T
CTGAGAGCCATGCATCTGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGCTACTGTGACACAGCACTG
GGG
TGTCAGAGGTCATTCTCATATTCTCGAAGTGCTGGGGACCTTCACCTGGATCTTCTCAAGCACTTTT
GA


Translation (303 aa):
MASLGRQVPEWHRLLALSWACLVRQTPHLREQKQMSPSLSCKLTTVPGRGSFQEFSSITPQKYMQEPENR
T
RLVQCLHEEQKPCVDPESLEPEKVIRSLQDMGFAEAHIHSLFSIQPSVHPQQLLGIVSELLLLGLNPEP
V
FNALKKNPQLLKLSSMQMKRRSSYLRKLGLGE
GKLKRVLSVCPEVFTMHQRDIDRVVKVLREKCLFTAQ
H
ITDVLHRCPTVLQEDPNELEYKFQ
PVPLSRSFKFLKNSWIKRRRRSLRAMHLRRKRKRRKRRSYCDTAL
G
CQRSFSYSRSAGDLHLDLLKHF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser