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Report for CCDS48366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48366.1 Under review, update Mus musculus 1 Optc 23 108 98 CCDS HistoryNCBI Gene:269120Re-query CCDS DB by CCDS ID:48366.1Re-query CCDS DB by GeneID:269120See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48366.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149380.7 ENSMUSP00000115661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149380.7Link to Ensembl Protein Viewer:ENSMUSP00000115661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149380Re-query CCDS DB by Protein ID:ENSMUSP00000115661
Original member Current member EBI ENSMUST00000153617.8 ENSMUSP00000123262.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153617.8Link to Ensembl Protein Viewer:ENSMUSP00000123262.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000153617Re-query CCDS DB by Protein ID:ENSMUSP00000123262
Original member NCBI NM_001160420.2 NP_001153892.1 Updated not alive Link to Nucleotide Sequence:NM_001160420.2Link to Protein Sequence:NP_001153892.1Re-query CCDS DB by Nucleotide ID:NM_001160420Re-query CCDS DB by Protein ID:NP_001153892
Current member NCBI NM_001160420.3 NP_001153892.2 Pending alive Link to Nucleotide Sequence:NM_001160420.3Link to Protein Sequence:NP_001153892.2Re-query CCDS DB by Nucleotide ID:NM_001160420Re-query CCDS DB by Protein ID:NP_001153892Link to BLAST:NP_001153892.2
Original member NCBI NM_001160421.2 NP_001153893.1 Updated not alive Link to Nucleotide Sequence:NM_001160421.2Link to Protein Sequence:NP_001153893.1Re-query CCDS DB by Nucleotide ID:NM_001160421Re-query CCDS DB by Protein ID:NP_001153893
Current member NCBI NM_001160421.3 NP_001153893.2 Pending alive Link to Nucleotide Sequence:NM_001160421.3Link to Protein Sequence:NP_001153893.2Re-query CCDS DB by Nucleotide ID:NM_001160421Re-query CCDS DB by Protein ID:NP_001153893Link to BLAST:NP_001153893.2

Chromosomal Locations for CCDS 48366.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133897800 133897970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133898342 133898437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133900988 133901190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133903650 133903782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133904977 133905256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133906931 133907034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAGGGGGTGTCTAGCTGTCCCCTGCTCTGACAGGCAGTCATCATCTCCACCAGAAGCTCCCTGGAAGC
TGCTGAGCCAGACGGAACCAAAAGCATCTAAAAGGATGTACCTCAGAGGGATTCAGCCATTCCCACTCCT
ACCCCTCCCTCAGAACCTCATGAAGTTCCTGGCTTTCCTGAGTCTGTTGAGCTTGGTGCTGCAGAAGGCA
GAGACAGCTTCTCTCCTAGGGGAGAGAGAAAGAGAAGAGCAGAGCCCTGAGGAAGGTGACACTTACGCGT
CCCTGTATGTGGGGAACCATACCCTGAGCATAGAGGACTACAACGAGGTCATTGATCTCAGCAACTATGA
AGAACTGGCAGACTATGGAGACCAGATCCCTGAGGCTAAAATAAGCAATCTGACTCTTCCAACAAGAACT
AGTCCCACTAGCACTGTGGCTCAGAAGACATTGTCACCAAACCTCACGATGGCCGTACCTACCACCACTG
GCCTACTAAACTCCCAGAGCAGTCATGCAAAACTGAGAAGGATCGACCTCTCTGGCAACTCCATCTCCTC
CATCCACAACGATGCCCTCCGCCTGCTGCCTGCCCTGCAGGATCTGATCCTTCCAGAGAACCAGCTGGCA
GCCCTGCCTGTGCTGCCCAGTGGCATTGAGTTCCTGGACGTCCGCCTGAATCGGCTGCAGAGCTCTGGGA
TACAGCCTGAGGCATTCGTGGCGCTGAAGAAGCTGCAGTTTCTCTACCTGGCCAACAACATGCTGGATTC
CATCCCTGGGCCTTTGCCCCTCAGCCTGCGCTCTCTGCACCTGCAGAATAACATGATCGAGACCATGGAA
AGCGACACCTTCTGTGACACCGGGGAACACAGACATGAGCGCCGGCAGCTGGAAGACATCCGCCTGGACG
GGAACCCCATCAACCTGAGCCTTTTCCCAGAGGCCTATTTTTGCCTGCCACGGCTCCCTGTGGGCCACTT
CACCTAG

Translation (328 aa):
MRGCLAVPCSDRQSSSPPEAPWKLLSQTEPKASKRMYLRGIQPFPLLPLPQNLMKFLAFLSLLSLVLQKA
ETASLLGEREREEQSPEEGDTYASLYVGNHTLSIEDYNEVIDLSNYEELADYGDQIPEAKISNLTLPTRT
SPTSTVAQKTLSPNLTMAVPTTTGLLNSQSSHAKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLA
ALPVLPSGIEFLDVRLNRLQSSGIQPEAFVALKKLQFLYLANNMLDSIPGPLPLSLRSLHLQNNMIETME
SDTFCDTGEHRHERRQLEDIRLDGNPINLSLFPEAYFCLPRLPVGHFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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