NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15299.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15299.2 Under review, update Mus musculus 1 Optc 23 108 98 CCDS HistoryNCBI Gene:269120Re-query CCDS DB by CCDS ID:15299.2Re-query CCDS DB by GeneID:269120See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15299.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15299.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124051.8 ENSMUSP00000120568.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124051.8Link to Ensembl Protein Viewer:ENSMUSP00000120568.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000124051Re-query CCDS DB by Protein ID:ENSMUSP00000120568
Original member NCBI NM_054076.3 NP_473417.2 Updated not alive Link to Nucleotide Sequence:NM_054076.3Link to Protein Sequence:NP_473417.2Re-query CCDS DB by Nucleotide ID:NM_054076Re-query CCDS DB by Protein ID:NP_473417
Current member NCBI NM_054076.4 NP_473417.3 Pending alive Link to Nucleotide Sequence:NM_054076.4Link to Protein Sequence:NP_473417.3Re-query CCDS DB by Nucleotide ID:NM_054076Re-query CCDS DB by Protein ID:NP_473417Link to BLAST:NP_473417.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473417.3 328 Q920A0 328 100% 0 0

Chromosomal Locations for CCDS 15299.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133897800 133897970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133898342 133898437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133900988 133901190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133901995 133902153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133903650 133903782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133904977 133905256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133906931 133907034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGGGGGTGTCTAGCTGTCCCCTGCTCTGACAGGCAGTCATCATCTCCACCAGAAGCTCCCTGGAAGC
TGCTGAGCCAGACGGAACCAAAAGCATCTAAAAGGATGTACCTCAGAGGGATTCAGCCATTCCCACTCCT
ACCCCTCCCTCAGAACCTCATGAAGTTCCTGGCTTTCCTGAGTCTGTTGAGCTTGGTGCTGCAGAAGGCA
GAGACAGCTTCTCTCCTAGGGGAGAGAGAAAGAGAAGAGCAGAGCCCTGAGGAAGGTGACACTTACGCGT
CCCTGTATGTGGGGAACCATACCCTGAGCATAGAGGACTACAACGAGGTCATTGATCTCAGCAACTATGA
AGAACTGGCAGACTATGGAGACCAGATCCCTGAGGCTAAAATAAGCAATCTGACTCTTCCAACAAGAACT
AGTCCCACTAGCACTGTGGCTCAGAAGACATTGTCACCAAACCTCACGATGGCCGTACCTACCACCACTG
GCCTACTAAACTCCCAGAGCAGTCATGGCCTGCCTACCTGCCTGGTCTGTGTGTGCCTTGGCTCTTCTGT
CTACTGTGATGATGCAGACCTGGAGAACATCCCTCCTCTTCCCCAGATGACCACCTACCTATATGCTCGC
TTCAACCACATCAGCCACATCCAGGCTGGAGACTTCAAAGGGCTGACAAAACTGAGAAGGATCGACCTCT
CTGGCAACTCCATCTCCTCCATCCACAACGATGCCCTCCGCCTGCTGCCTGCCCTGCAGGATCTGATCCT
TCCAGAGAACCAGCTGGCAGCCCTGCCTGTGCTGCCCAGTGGCATTGAGTTCCTGGACGTCCGCCTGAAT
CGGCTGCAGAGCTCTGGGATACAGCCTGAGGCATTCGTGGCGCTGAAGAAGCTGCAGTTTCTCTACCTGG
CCAACAACATGCTGGATTCCATCCCTGGGCCTTTGCCCCTCAGCCTGCGCTCTCTGCACCTGCAGAATAA
CATGATCGAGACCATGGAAAGCGACACCTTCTGTGACACCGGGGAACACAGACATGAGCGCCGGCAGCTG
GAAGACATCCGCCTGGACGGGAACCCCATCAACCTGAGCCTTTTCCCAGAGGCCTATTTTTGCCTGCCAC
GGCTCCCTGTGGGCCACTTCACCTAG

Translation (381 aa):
MRGCLAVPCSDRQSSSPPEAPWKLLSQTEPKASKRMYLRGIQPFPLLPLPQNLMKFLAFLSLLSLVLQKA
ETASLLGEREREEQSPEEGDTYASLYVGNHTLSIEDYNEVIDLSNYEELADYGDQIPEAKISNLTLPTRT
SPTSTVAQKTLSPNLTMAVPTTTGLLNSQSSHGLPTCLVCVCLGSSVYCDDADLENIPPLPQMTTYLYAR
FNHISHIQAGDFKGLTKLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLAALPVLPSGIEFLDVRLN
RLQSSGIQPEAFVALKKLQFLYLANNMLDSIPGPLPLSLRSLHLQNNMIETMESDTFCDTGEHRHERRQL
EDIRLDGNPINLSLFPEAYFCLPRLPVGHFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH