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Report for CCDS87962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87962.1 Public Mus musculus 10 Phactr2 23 108 98 CCDS HistoryNCBI Gene:215789Re-query CCDS DB by CCDS ID:87962.1Re-query CCDS DB by GeneID:215789See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105545.11 ENSMUSP00000101184.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105545.11Link to Ensembl Protein Viewer:ENSMUSP00000101184.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000105545Re-query CCDS DB by Protein ID:ENSMUSP00000101184
Original member Current member NCBI NM_001195065.1 NP_001181994.1 Accepted alive Link to Nucleotide Sequence:NM_001195065.1Link to Protein Sequence:NP_001181994.1Re-query CCDS DB by Nucleotide ID:NM_001195065Re-query CCDS DB by Protein ID:NP_001181994Link to BLAST:NP_001181994.1

Chromosomal Locations for CCDS 87962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13214258 13214273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13224784 13224860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13232539 13232676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13234150 13234211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13239910 13239965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13245411 13245567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13247002 13247195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13253342 13253879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13255310 13255321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13261766 13261924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13266973 13267053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13291795 13291962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13474056 13474278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGCGGAAGCCGGCAGGAGTCCTGAGATGTCCCCGGACCAGCCAGCGGGCCAGGAGGCGGCGGCGGCGG
AG
GCTCTGGACCCCGAACCCGAGGCTCCCGGGCCACCGGTGCCTTCCCTGCGCTGGCTTCCCGGGGATCC
G
AGTCCCCGTGGCCGCTCCCAGAGCGACCTGTCGTCAGCCTCGAGCCGGGGCCGCCCGCTCAGAGTCCAC
ATC
TCCGGCTCAGTTGATGGACTAGACAAAGCCTCCATAGCAAACTCAGATGGCCCCCCAGCAGGTTCCC
AG
ACACCTCCCTTCAAGAGAAAGGGGAAACTCTCCACCATTGGGAAAATCTTCAAGCCTTGGAAATGGAG
G
AAAAAGAAGACCAGTGACAAATTTAGAGAAACCTCAGCAGTATTAGAGAGGAAGATATCCACCAGACAA
AGT
AGAGAGGAGCTGATAAGAAGGGGCCTGCTTAAGGAATTGCCTGATCAAGATGGAGATGTAACAGTTA
AC
TTTGAAAATTCAAACGGGCACATGATACACATCGGAGAGGAAGCTACCCAAGAGGAGAATGTAGGGAA
A
CCTGAAGAAGGGAGTGACTCTGTGTGTGAGAAAACACCACCTCGGGAGGAGCAGGCAGAAGAGAAGACA
G
CT
GCATCCAGAGCTGGTTCTTCTCACCCGAAGAAAGCAACCGGCTCCAAAGCGTCAGCCTCACCGTCCA
CT
TCCTCCACCTCTTCTCGTCCCAGAGCACCCAAGGAGTCACTGGCTGGCAAAGCAGGCCTAGTGGGGAC
C
ACGAGGGGCAAGAAAAAAATTAGCAAGCAGCCGGTGGCGTCCCGACTGTCCCCCAGCACGACCACTTCT
GAC
ACGCCTAGTCTTAAGGGAGAGCTCTCAGACACTGGGATAGAGAGCCTCACACCAGAGGAGACTGTTG
CT
GGAGCAGAGGAGCAGGCCACAAGCAAATCCAAGGCGGCCATCGCTCTGCCACCTAGCACAGCACCACC
A
TCCCCACCTGCCCTTCTTCTGCCCCCTGAAGATCAGTGCACTATTGCCTTGGACACTCCCATGGTCCTA
GTC
AGTGATGGACCTACCCTGCCCGTCTCTGCCTTAGACACAAGTCAGCTCCTTTGGACTGAAGAACCAT
CG
AGCAGAACCTCTCCGTACTCAAGCACTGGCTTAGGTGGGAGCAGAGAACAGGCAAAATGTTTTACAAC
C
AAAGATGAGCTGGGACCACAGTTACTGACCCCTGGGCAGATGGGAGACTCGTCAGAATCCTTCAGTGCC
CCA
GAAGATGAGGCCCCAAGAGAGTACCAAGCCAACGACTCTGACTCAGATGGACCCATCTTGTACACTG
AT
GATGATGATGAAGAAGATGATGATGATGACAGCAGTGGAGAAAGTGCACTGGCAAGCAAGATAAGACG
A
AGGGATACACTTGCCATCAAACTTGGCAACAGACCGTCCAAGAAAGAACTGGAGGATAAAAACATCCTG
CAG
CGAACATCTGAAGAGGAGAGGCAGGAGCTGCGACAACAGATCGGAACCAAGCTGGTCAGGAGACTCA
GC
CAGAGGCCAACAACGGAAGAATTAGAGCAAAGAAACATCTTAAAACAAAAGAACGAAGAAGAGGAACA
A
GAGGCGAAAATGGAGCTCAAGCGGAGGCTCAGCCGGAAGCTCAGCCTGAGACCTACCGTGGCAGAGCTA
CAA
GCCCGAAGGATCCTGCGGTTCAATGAGTATGTAGAAGTGACAGATTCCCCAGACTATGACCGCCGAG
CA
GACAAGCCCTGGGCCAGGTTGACACCTGCAGACAAGGCAGCAATAAGGAAAGAACTAAATGAATTTAA
A
AGCACAGAAATGGAAGTTCATGAAGAGAGTCGACAGTTTACAAGGTTTCATCGTCCATAA


Translation (626 aa):
MAEAGRSPEMSPDQPAGQEAAAAEALDPEPEAPGPPVPSLRWLPGDPSPRGRSQSDLSSASSRGRPLRVH
I
SGS
VDGLDKASIANSDGPPAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQ
S
REELIRRGLLKELPDQ
DGDVTVNFENSNGHMIHIGEEATQEENVGKPEEGSDSVCEKTPPREEQAEEKT
A
ASRAGSSHPKKATGSKASASPSTSSTSSRPRAPKESLAGKAGLVGTTRGKKKISKQPVASRLSPSTTTS
D
TPSLKGELSDTGIESLTPEETVAGAEEQATSKSKAAIALPPSTAPPSPPALLLPPEDQCTIALDTPMVL
V
SDGPTLPVSALDTSQLLWTEEPSSRTSPYSSTGLGGSREQAK
CFTTKDELGPQLLTPGQMGDSSESFSA
P
EDEAPREYQANDSDSDGPILYTDDDDEEDDDDDSSGE
SALASKIRRRDTLAIKLGNRPSKKELEDKNIL
Q
RTSEEERQELRQQIGTKLV
RRLSQRPTTEELEQRNILKQKNEEEEQEAKMELKRRLSRKLSLRPTVAEL
Q
ARRILRFNEYVEVTDSPDYDRRADKPWARLTPADK
AAIRKELNEFKSTEMEVHEESRQFTRFHRP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser