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Report for CCDS23853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23853.1 Public Mus musculus 10 Serinc1 23 108 98 CCDS HistoryNCBI Gene:56442Re-query CCDS DB by CCDS ID:23853.1Re-query CCDS DB by GeneID:56442See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020027.10 ENSMUSP00000020027.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020027.10Link to Ensembl Protein Viewer:ENSMUSP00000020027.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020027Re-query CCDS DB by Protein ID:ENSMUSP00000020027
Original member NCBI NM_019760.3 NP_062734.1 Updated not alive Link to Nucleotide Sequence:NM_019760.3Link to Protein Sequence:NP_062734.1Re-query CCDS DB by Nucleotide ID:NM_019760Re-query CCDS DB by Protein ID:NP_062734
Current member NCBI NM_019760.4 NP_062734.1 Accepted alive Link to Nucleotide Sequence:NM_019760.4Link to Protein Sequence:NP_062734.1Re-query CCDS DB by Nucleotide ID:NM_019760Re-query CCDS DB by Protein ID:NP_062734Link to BLAST:NP_062734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062734.1 453 Q9QZI8 453 100% 0 0

Chromosomal Locations for CCDS 23853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 57517157 57517292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57519363 57519593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57519698 57519842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57522956 57523216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57523961 57524098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57524320 57524399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57525325 57525494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57527665 57527826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57532357 57532395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGGGAGCGTTCTGGGGCTGTGCTCCGTGGCGAGCTGGATTCCGTGTTTGTGTGGCAGTGCCCCGTGTT
TGCTGTGCCGATGCTGCCCCAGTGGGAACAACTCCACTGTGACTAGATTGATCTACGCACTTTTCTTGCT
CGTCGGAGTATGTGTAGCTTGTGTAATGTTAATACCAGGAATGGAAGAACAACTGAATAAGATTCCTGGG
TTCTGTGAGAATGAGAAAGGTGTTGTTCCCTGTAATATCCTGGTTGGCTACAAAGCTGTGTATCGCCTGT
GCTTTGGTTTGGCCATGTTCTATCTTCTCCTCTCTTTACTAATGATCAAGGTAAAAAGCAGCAGTGACCC
TAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGTTGCAATTATCATTGGCGCA
TTCTTCATCCCAGAAGGCACTTTTACAACTGTGTGGTTTTATGTAGGCATGGCGGGCGCCTTTTGTTTCA
TCCTTATACAACTAGTCTTACTTATTGATTTTGCCCATTCTTGGAATGAATCGTGGGTTGAAAAAATGGA
AGAAGGGAACTCAAGATGTTGGTATGCAGCCCTACTGTCAGCTACAGCTCTGAATTACTTGCTGTCTTTA
GTTGCCGTCGTGCTATTCTTTGTCTACTACACTCACCCAGCCAGCTGTGCAGAGAACAAGGCGTTCATCA
GTGTCAACATGCTCCTCTGCATTGGCGCCTCAGTAATGTCCATTCTGCCCAAGATCCAGGAATCACAACC
AAGGTCTGGCTTGTTACAGTCGTCAGTAATTACAGTCTACACAATGTATTTGACATGGTCTGCTATGACC
AATGAACCAGAAACAAATTGCAATCCAAGTCTACTGAGCATCATTGGCTTCAATACCACAAGGCCTATTC
CAAAGGACGGGCAGTCTGTTCAGTGGTGGCATCCTCAAGGAATTATAGGACTTGTTCTTTTCCTGCTGTG
TGTGTTTTATTCGAGCATCCGTACCTCCAACAACAGTCAGGTTAATAAGCTGACTCTAACAAGTGATGAG
TCAACATTGATAGAGGATGGGAATGGCAGAAGTGACGGATCACTAGATGATGGTGATGGCATCCACCGAG
CTGTAGATAACGAGAGGGATGGAGTCACGTACAGTTACTCCTTCTTTCACTTCATGCTCTTCTTGGCTTC
ACTTTACATCATGATGACCCTCACCAATTGGTACAGGTATGAGCCTTCTCGTGAGATGAAAAGTCAGTGG
ACAGCAGTCTGGGTGAAAATCTCTTCCAGTTGGATTGGCCTTGTGCTGTACGTGTGGACACTAGTGGCAC
CACTTGTTCTTACAAATCGGGATTTTGACTGA

Translation (453 aa):
MGSVLGLCSVASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPG
FCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGA
FFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSL
VAVVLFFVYYTHPASCAENKAFISVNMLLCIGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMT
NEPETNCNPSLLSIIGFNTTRPIPKDGQSVQWWHPQGIIGLVLFLLCVFYSSIRTSNNSQVNKLTLTSDE
STLIEDGNGRSDGSLDDGDGIHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRYEPSREMKSQW
TAVWVKISSSWIGLVLYVWTLVAPLVLTNRDFD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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