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Report for CCDS48573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48573.1 Public Mus musculus 10 Tbata 23 108 98 CCDS HistoryNCBI Gene:65971Re-query CCDS DB by CCDS ID:48573.1Re-query CCDS DB by GeneID:65971See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 48573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079235.6 ENSMUSP00000078227.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079235.6Link to Ensembl Protein Viewer:ENSMUSP00000078227.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079235Re-query CCDS DB by Protein ID:ENSMUSP00000078227
Original member Current member NCBI NM_023064.3 NP_075551.3 Accepted alive Link to Nucleotide Sequence:NM_023064.3Link to Protein Sequence:NP_075551.3Re-query CCDS DB by Nucleotide ID:NM_023064Re-query CCDS DB by Protein ID:NP_075551Link to BLAST:NP_075551.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075551.3 231 Q7TSD4-6 231 100% 0 0

Chromosomal Locations for CCDS 48573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61175345 61175403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61175731 61175978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61179245 61179505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61180315 61180442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (696 nt):
CTGTTTCTGGGGAATGTATATAAGGGGAGTTTAGCACCTCGTAGGGATGAGGTGACTAGTCCAAAGGCAG
AGCCCCAGCCAGAGACGAAGCCGGAGAACCTTCCAAGGAGCCACGGGGATGTTGGGCTCCAGAAAGAGAC
TGTGGTCCCAGGCATTGTGGATTTCGAGCTGATCCATGAGGAGCTGAAGACCACAAAGCCCCAAACATCA
CAACCAACACCCAGTGCCTACCGCTTTGGACGCCTAAGCCACCATTCCTTCTTCTCGAGGCACCACCCCC
AACCACAGCGAGTGACTCATATCCAAGTTACAGGAAGAGAGGACCTGGAGCACTCCCTGCCCCTCACCAC
CTCTTTCCAGCTCCTTCAAGCTCCTGGGGTCCAGCCCATGGATCTCACTCCCTCTGCAGATATCGCTGGG
AAGCCTGTCTGCGTGGTCAGGGACGAGTTCTCTCTGTCGGCCTTGACTCAGCCCACATTCTTATCCCGCT
GTCTGATGGGGATGCCCACCATCTCTGTCCCCATTGGGGATCCACAGTCCAATCGGAACCCCCAGCTTTC
TACTTCTGACACCTGGAGGAAGAAACTGAAGGACCTGGCTTCCCGAGTGACTGTCTTCACTAAGGAAATC
CAGCCAAAGCCCGATGAGGTTGGTGTTGCACAAAGAATGGAGCCTAGAAAAAAAAGGCCTTCTTAA

Translation (231 aa):
MFLGNVYKGSLAPRRDEVTSPKAEPQPETKPENLPRSHGDVGLQKETVVPGIVDFELIHEELKTTKPQTS
QPTPSAYRFGRLSHHSFFSRHHPQPQRVTHIQVTGREDLEHSLPLTTSFQLLQAPGVQPMDLTPSADIAG
KPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGDPQSNRNPQLSTSDTWRKKLKDLASRVTVFTKEI
QPKPDEVGVAQRMEPRKKRPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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