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Report for CCDS23902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23902.1 Public Mus musculus 10 Nrbf2 23 108 98 CCDS HistoryNCBI Gene:641340Re-query CCDS DB by CCDS ID:23902.1Re-query CCDS DB by GeneID:641340See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077839.12 ENSMUSP00000097254.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077839.12Link to Ensembl Protein Viewer:ENSMUSP00000097254.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077839Re-query CCDS DB by Protein ID:ENSMUSP00000097254
Original member NCBI NM_001036293.2 NP_001031370.1 Updated not alive Link to Nucleotide Sequence:NM_001036293.2Link to Protein Sequence:NP_001031370.1Re-query CCDS DB by Nucleotide ID:NM_001036293Re-query CCDS DB by Protein ID:NP_001031370
Current member NCBI NM_001036293.3 NP_001031370.1 Accepted alive Link to Nucleotide Sequence:NM_001036293.3Link to Protein Sequence:NP_001031370.1Re-query CCDS DB by Nucleotide ID:NM_001036293Re-query CCDS DB by Protein ID:NP_001031370Link to BLAST:NP_001031370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001031370.1 287 Q8VCQ3 287 100% 0 0

Chromosomal Locations for CCDS 23902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 67267459 67268166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67270106 67270146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67275570 67275654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67285097 67285126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGAAGTGATGGAAGGACCCCTCAACCTTGCTCACCAGCAGAGCCGCCGAGCAGACCGTTTGTTAGCTG
CTGGGAAATACGAAGAGGCGATTTCTTGTCACAGAAAGGCAACAACATATCTCTCTGAAGCCATGAAGCT
GACCGAGTCTGAGCAGGCTCACTTATCACTGGAACTGCAAAGGGACAGCCACATGAAACAGCTGCTTCTC
ATCCAGGAGAGGTGGAAGAGAGCAAAGCGAGAGGAGCGGTTGAAAGCGCAGCAGAGCACGGAACGGGACG
GAGCCCCCCACCTGCAGGCACCTCCCAGGCCCTCTGAGGATGCTGAAGGCCAGAGCCCTCTGCTTTCTCA
GCCATACATCCCTTCCACAGAGAGGCGCCTCCCCGAGGTGCAGGGGGTCTTTGACAGGGATCCAGACACA
TTGCTGTTTTTACTTCAGCAAAAGAATGAGCCATCAGAGCCCTGTATTGGAAGCAAAGCCCCAAAAGATG
ATAAAACGATTATAGAGGAGCAGGCAACCAAAATAGCAGATTTGAAGAGGCATGTGGAGTTCCTTGTGGC
TGAGAATGAAAGATTAAGGAAAGAAAATAAACAGCTAAAGGCTGAAAAGGCCAGACTCCTGAAAGGCACA
GCTGAGAAGGAACTGGACGTCGATGCAGACTTTGTAGAGAAGTCAGAGCTGTGGGGCTTACCTTCACACT
CGGAATCCGCCGCTGCCTCTTCAACCTGGCAGAAGTTTGCAGCTAACACGGGGAAAGCCAAGGACATTCC
AATACCCAACCTTCCTCCTCTGGATTTCCCATCTCCAGAGCTTCCTCTGATGGAGCTCTCGGAGGACATT
CTGAAAGGATTCATGAATGACTAA

Translation (287 aa):
MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLL
IQERWKRAKREERLKAQQSTERDGAPHLQAPPRPSEDAEGQSPLLSQPYIPSTERRLPEVQGVFDRDPDT
LLFLLQQKNEPSEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGT
AEKELDVDADFVEKSELWGLPSHSESAAASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDI
LKGFMND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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