NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48726.1 Public Mus musculus 10 Smarcc2 23 108 98 CCDS HistoryNCBI Gene:68094Re-query CCDS DB by CCDS ID:48726.1Re-query CCDS DB by GeneID:68094See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099131.10 ENSMUSP00000096734.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099131.10Link to Ensembl Protein Viewer:ENSMUSP00000096734.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099131Re-query CCDS DB by Protein ID:ENSMUSP00000096734
Original member Current member NCBI NM_001114096.1 NP_001107568.1 Accepted alive Link to Nucleotide Sequence:NM_001114096.1Link to Protein Sequence:NP_001107568.1Re-query CCDS DB by Nucleotide ID:NM_001114096Re-query CCDS DB by Protein ID:NP_001107568Link to BLAST:NP_001107568.1

Chromosomal Locations for CCDS 48726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128459327 128459437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128461352 128461471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128462981 128463066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463692 128463773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463867 128463959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465157 128465226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465437 128465506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128468795 128468870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469006 128469137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469242 128469357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469665 128469789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474201 128474260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474372 128474409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474683 128474813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474993 128475064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480350 128480463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480851 128481004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128481682 128481774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482083 128482202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482291 128482353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482684 128482942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483175 128483336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483591 128483655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484079 128484214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484297 128484463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128485560 128485694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487255 128487636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487934 128488017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128488896 128488972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGCGGTGCGGAAGAAGGACGGCGGCCCCAACGTGAAGTACTACGAGGCCGCGGACACCGTGACCCAGT
TCGACAACGTGCGGCTCTGGCTCGGCAAGAACTACAAGAAGTACATACAAGCAGAACCGCCAACCAACAA
GTCTCTGTCCAGCCTGGTGGTGCAGTTGCTCCAGTTTCAGGAAGAGGTTTTTGGCAAACATGTCAGCAAC
GCACCGCTTACTAAACTGCCGATCAAATGTTTCCTAGATTTCAAAGCAGGAGGATCCCTCTGCCATATTC
TTGCAGCTGCCTACAAATTCAAGAGTGACCAGGGATGGCGGCGTTACGATTTCCAGAATCCATCACGCAT
GGACCGCAATGTGGAAATGTTCATGACCATTGAGAAGTCCTTGGTACAGAATAATTGCCTGTCACGACCT
AACATTTTCCTCTGCCCAGAAATTGAGCCCAAACTGCTAGGGAAATTAAAAGACATTGTTAAGAGACACC
AGGGAACCATCTCTGAGGATAAGAGCAATGCCTCCCATGTTGTGTATCCTGTCCCAGGGAACCTAGAAGA
AGAGGAATGGGTACGGCCAGTCATGAAGAGGGATAAACAGGTTCTTCTGCACTGGGGCTACTATCCTGAC
AGCTACGACACGTGGATCCCAGCGAGTGAAATTGAAGCATCTGTGGAGGACGCTCCCACTCCTGAGAAAC
CGAGGAAGGTCCATGCGAAGTGGATCCTCGACACCGACACATTCAACGAGTGGATGAATGAGGAAGACTA
CGAAGTCAGTGACGACAAAAGCCCAGTCTCCCGCAGGAAGAAGATCTCAGCCAAGACGCTGACAGACGAG
GTAAACAGCCCAGATTCAGACAGACGAGACAAGAAGGGGGGCAACTATAAGAAGAGGAAGCGCTCTCCCT
CTCCTTCACCCACCCCAGAGGCTAAGAAGAAAAACGCTAAGAAAGGACCCTCAACACCTTATACCAAGTC
AAAGCGAGGCCACAGAGAAGAGGAACAAGAAGACCTGACAAAAGACATGGATGAGCCCTCTCCAGTCCCA
AACGTGGAAGAGGTGACACTCCCCAAAACAGTCAACACTAAAAAGGACTCTGAGTCAGCCCCAGTCAAAG
GCGGCACCATGACTGACCTGGATGAACAGGACGATGAAAGCATGGAGACCACCGGCAAGGACGAGGATGA
GAACAGCACGGGCAACAAAGGCGAGCAGACGAAGAACCCGGACCTGCATGAGGACAATGTGACCGAGCAG
ACCCACCACATCATCATCCCCAGCTACGCCGCCTGGTTTGACTACAACAGCGTCCATGCCATTGAACGGA
GGGCTCTTCCTGAGTTCTTCAACGGCAAGAACAAGTCTAAGACTCCAGAGATCTACCTGGCGTATCGGAA
CTTCATGATTGACACTTACCGACTGAATCCCCAGGAGTATCTAACATCTACTGCCTGTCGGCGGAATTTG
GCGGGTGATGTCTGCGCTATCATGAGGGTCCATGCCTTCCTGGAACAGTGGGGTCTTATTAACTACCAGG
TAGATGCTGAGAGCCGACCAACCCCAATGGGGCCTCCACCCACCTCTCACTTCCATGTCTTGGCGGACAC
ACCATCAGGGCTGGTTCCTCTTCAGCCGAAGCCTCCACAGGGCCGCCAGGTTGATGCTGACACCAAGGCT
GGGCGGAAGGGCAAAGAGCTGGATGACCTGGTGCCAGAGACGGCTAAGGGCAAGCCAGAGCTGCAGAGCT
CTGCTTCCCAGCAAATGCTGAACTTCCCTGAGAAGGGCAAGGAGAAACCAGCAGACATGCAGAATTTTGG
GCTGCGCACAGACATGTACACAAAGAAGAACGTCCCCTCCAAGAGCAAAGCTGCAGCAAGTGCCACTCGG
GAATGGACGGAGCAGGAGACTCTGCTGCTCCTGGAGGCTTTGGAAATGTACAAGGACGACTGGAACAAAG
TATCTGAGCACGTGGGAAGCCGCACGCAGGACGAGTGCATCTTGCATTTTCTCCGCCTTCCCATTGAAGA
CCCATACCTGGAGGACTCGGAGGCTTCTCTAGGCCCTCTGGCCTACCAACCCATCCCCTTCAGTCAGTCA
GGCAACCCTGTTATGAGCACCGTTGCCTTCCTGGCCTCTGTCGTCGATCCCCGAGTTGCCTCTGCTGCTG
CGAAGTCAGCCCTAGAAGAGTTCTCAAAAATGAAGGAAGAGGTGCCCACAGCTTTGGTGGAAGCCCACGT
GCGTAAGGTCGAAGAAGCGGCCAAAGTCACAGGCAAGGCCGACCCAGCCTTTGGTCTGGAGAGTAGCGGC
ATCGCAGGGACTGCCTCTGATGAGCCTGAGCGCATTGAGGAAAGCGGGACTGAGGAGGCACGGCCAGAGG
GCCAGGCAGCAGATGAGAAGAAGGAGCCTAAGGAACCACGGGAAGGAGGGGGCGCTGTGGAGGAAGAAGC
AAAGGAGGAAATAAGTGAGGTCCCCAAGAAAGATGAAGAGAAAGGGAAAGAAGGTGACAGTGAGAAGGAG
TCTGAGAAGAGTGACGGGGACCCGATAGTTGATCCTGAGAAAGACAAGGAACCAACAGAAGGGCAGGAGG
AAGTGCTAAAGGAAGTGGCAGAGCCAGAGGGGGAGAGGAAAACCAAGGTGGAGCGTGACATTGGTGAAGG
CAACCTGTCCACAGCTGCAGCCGCAGCCCTGGCCGCTGCTGCAGTCAAGGCCAAGCACTTGGCTGCAGTT
GAGGAGAGAAAGATCAAGTCTTTGGTGGCTCTGCTGGTAGAGACCCAAATGAAGAAACTAGAGATCAAAC
TCCGACATTTTGAGGAGCTGGAGACAATAATGGACCGGGAGCGAGAGGCGCTGGAATACCAGAGGCAGCA
GCTCCTGGCCGACCGGCAAGCCTTCCACATGGAGCAGCTGAAGTATGCAGAGATGAGGGCCCGGCAGCAG
CACTTCCAGCAGATGCACCAGCAGCAGCAGCAGCAGCCACCAACCTTGCCCCCAGGCTCCCAGCCCATAC
CTCCCACCGGGGCTGCTGGACCACCTACAGTCCATGGTCTAGCTGTGCCTCCAGCCGCTGTGGCCTCTGC
CCCTCCTGGCAGTGGGGCCCCTCCTGGAAGCTTGGGCCCTTCTGAACAGATTGGGCAGGCAGGGACAACT
GCAGGGCCACAGCAGCCACAACAAGCTGGAGCCCCTCAGCCTGGGGCAGTCCCACCAGGGGTACCCCCCC
CTGGACCCCATGGCCCCTCACCGTTCCCCAACCAACCAACTCCTCCCTCAATGATGCCAGGGGCAGTGCC
AGGCAGCGGGCACCCAGGCGTGGCGGACCCAGGCACCCCGCTGCCTCCAGACCCCACAGCTCCAAGCCCA
GGCACAGTCACCCCTGTGCCACCTCCACAGTGA

Translation (1130 aa):
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSN
APLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRP
NIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPD
SYDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDE
VNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVP
NVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNL
AGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKPPQGRQVDADTKA
GRKGKELDDLVPETAKGKPELQSSASQQMLNFPEKGKEKPADMQNFGLRTDMYTKKNVPSKSKAAASATR
EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQS
GNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSG
IAGTASDEPERIEESGTEEARPEGQAADEKKEPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKE
SEKSDGDPIVDPEKDKEPTEGQEEVLKEVAEPEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAV
EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQ
HFQQMHQQQQQQPPTLPPGSQPIPPTGAAGPPTVHGLAVPPAAVASAPPGSGAPPGSLGPSEQIGQAGTT
AGPQQPQQAGAPQPGAVPPGVPPPGPHGPSPFPNQPTPPSMMPGAVPGSGHPGVADPGTPLPPDPTAPSP
GTVTPVPPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH