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Report for CCDS48727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48727.1 Public Mus musculus 10 Smarcc2 23 108 98 CCDS HistoryNCBI Gene:68094Re-query CCDS DB by CCDS ID:48727.1Re-query CCDS DB by GeneID:68094See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105235.9 ENSMUSP00000100868.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105235.9Link to Ensembl Protein Viewer:ENSMUSP00000100868.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105235Re-query CCDS DB by Protein ID:ENSMUSP00000100868
Original member Current member NCBI NM_001114097.1 NP_001107569.1 Accepted alive Link to Nucleotide Sequence:NM_001114097.1Link to Protein Sequence:NP_001107569.1Re-query CCDS DB by Nucleotide ID:NM_001114097Re-query CCDS DB by Protein ID:NP_001107569Link to BLAST:NP_001107569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107569.1 1213 Q6PDG5-1 1213 100% 0 0

Chromosomal Locations for CCDS 48727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128459327 128459437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128461352 128461471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128462981 128463066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463692 128463773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128463867 128463959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465157 128465226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128465437 128465506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128468795 128468870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469006 128469137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469242 128469357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128469665 128469789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474201 128474260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474372 128474409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474683 128474813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128474993 128475064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480350 128480463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128480851 128481004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482083 128482202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482291 128482353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128482684 128482942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483175 128483336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128483591 128483655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484079 128484214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128484297 128484463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128485560 128485694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487255 128487636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128487934 128488359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128488896 128488972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3642 nt):
ATGGCGGTGCGGAAGAAGGACGGCGGCCCCAACGTGAAGTACTACGAGGCCGCGGACACCGTGACCCAGT
TCGACAACGTGCGGCTCTGGCTCGGCAAGAACTACAAGAAGTACATACAAGCAGAACCGCCAACCAACAA
GTCTCTGTCCAGCCTGGTGGTGCAGTTGCTCCAGTTTCAGGAAGAGGTTTTTGGCAAACATGTCAGCAAC
GCACCGCTTACTAAACTGCCGATCAAATGTTTCCTAGATTTCAAAGCAGGAGGATCCCTCTGCCATATTC
TTGCAGCTGCCTACAAATTCAAGAGTGACCAGGGATGGCGGCGTTACGATTTCCAGAATCCATCACGCAT
GGACCGCAATGTGGAAATGTTCATGACCATTGAGAAGTCCTTGGTACAGAATAATTGCCTGTCACGACCT
AACATTTTCCTCTGCCCAGAAATTGAGCCCAAACTGCTAGGGAAATTAAAAGACATTGTTAAGAGACACC
AGGGAACCATCTCTGAGGATAAGAGCAATGCCTCCCATGTTGTGTATCCTGTCCCAGGGAACCTAGAAGA
AGAGGAATGGGTACGGCCAGTCATGAAGAGGGATAAACAGGTTCTTCTGCACTGGGGCTACTATCCTGAC
AGCTACGACACGTGGATCCCAGCGAGTGAAATTGAAGCATCTGTGGAGGACGCTCCCACTCCTGAGAAAC
CGAGGAAGGTCCATGCGAAGTGGATCCTCGACACCGACACATTCAACGAGTGGATGAATGAGGAAGACTA
CGAAGTCAGTGACGACAAAAGCCCAGTCTCCCGCAGGAAGAAGATCTCAGCCAAGACGCTGACAGACGAG
GTAAACAGCCCAGATTCAGACAGACGAGACAAGAAGGGGGGCAACTATAAGAAGAGGAAGCGCTCTCCCT
CTCCTTCACCCACCCCAGAGGCTAAGAAGAAAAACGCTAAGAAAGGACCCTCAACACCTTATACCAAGTC
AAAGCGAGGCCACAGAGAAGAGGAACAAGAAGACCTGACAAAAGACATGGATGAGCCCTCTCCAGTCCCA
AACGTGGAAGAGGTGACACTCCCCAAAACAGTCAACACTAAAAAGGACTCTGAGTCAGCCCCAGTCAAAG
GCGGCACCATGACTGACCTGGATGAACAGGACGATGAAAGCATGGAGACCACCGGCAAGGACGAGGATGA
GAACAGCACGGGCAACAAAGGCGAGCAGACGAAGAACCCGGACCTGCATGAGGACAATGTGACCGAGCAG
ACCCACCACATCATCATCCCCAGCTACGCCGCCTGGTTTGACTACAACAGCGTCCATGCCATTGAACGGA
GGGCTCTTCCTGAGTTCTTCAACGGCAAGAACAAGTCTAAGACTCCAGAGATCTACCTGGCGTATCGGAA
CTTCATGATTGACACTTACCGACTGAATCCCCAGGAGTATCTAACATCTACTGCCTGTCGGCGGAATTTG
GCGGGTGATGTCTGCGCTATCATGAGGGTCCATGCCTTCCTGGAACAGTGGGGTCTTATTAACTACCAGG
TAGATGCTGAGAGCCGACCAACCCCAATGGGGCCTCCACCCACCTCTCACTTCCATGTCTTGGCGGACAC
ACCATCAGGGCTGGTTCCTCTTCAGCCGAAGCCTCCACAGCAGAGCTCTGCTTCCCAGCAAATGCTGAAC
TTCCCTGAGAAGGGCAAGGAGAAACCAGCAGACATGCAGAATTTTGGGCTGCGCACAGACATGTACACAA
AGAAGAACGTCCCCTCCAAGAGCAAAGCTGCAGCAAGTGCCACTCGGGAATGGACGGAGCAGGAGACTCT
GCTGCTCCTGGAGGCTTTGGAAATGTACAAGGACGACTGGAACAAAGTATCTGAGCACGTGGGAAGCCGC
ACGCAGGACGAGTGCATCTTGCATTTTCTCCGCCTTCCCATTGAAGACCCATACCTGGAGGACTCGGAGG
CTTCTCTAGGCCCTCTGGCCTACCAACCCATCCCCTTCAGTCAGTCAGGCAACCCTGTTATGAGCACCGT
TGCCTTCCTGGCCTCTGTCGTCGATCCCCGAGTTGCCTCTGCTGCTGCGAAGTCAGCCCTAGAAGAGTTC
TCAAAAATGAAGGAAGAGGTGCCCACAGCTTTGGTGGAAGCCCACGTGCGTAAGGTCGAAGAAGCGGCCA
AAGTCACAGGCAAGGCCGACCCAGCCTTTGGTCTGGAGAGTAGCGGCATCGCAGGGACTGCCTCTGATGA
GCCTGAGCGCATTGAGGAAAGCGGGACTGAGGAGGCACGGCCAGAGGGCCAGGCAGCAGATGAGAAGAAG
GAGCCTAAGGAACCACGGGAAGGAGGGGGCGCTGTGGAGGAAGAAGCAAAGGAGGAAATAAGTGAGGTCC
CCAAGAAAGATGAAGAGAAAGGGAAAGAAGGTGACAGTGAGAAGGAGTCTGAGAAGAGTGACGGGGACCC
GATAGTTGATCCTGAGAAAGACAAGGAACCAACAGAAGGGCAGGAGGAAGTGCTAAAGGAAGTGGCAGAG
CCAGAGGGGGAGAGGAAAACCAAGGTGGAGCGTGACATTGGTGAAGGCAACCTGTCCACAGCTGCAGCCG
CAGCCCTGGCCGCTGCTGCAGTCAAGGCCAAGCACTTGGCTGCAGTTGAGGAGAGAAAGATCAAGTCTTT
GGTGGCTCTGCTGGTAGAGACCCAAATGAAGAAACTAGAGATCAAACTCCGACATTTTGAGGAGCTGGAG
ACAATAATGGACCGGGAGCGAGAGGCGCTGGAATACCAGAGGCAGCAGCTCCTGGCCGACCGGCAAGCCT
TCCACATGGAGCAGCTGAAGTATGCAGAGATGAGGGCCCGGCAGCAGCACTTCCAGCAGATGCACCAGCA
GCAGCAGCAGCAGCCACCAACCTTGCCCCCAGGCTCCCAGCCCATACCTCCCACCGGGGCTGCTGGACCA
CCTACAGTCCATGGTCTAGCTGTGCCTCCAGCCGCTGTGGCCTCTGCCCCTCCTGGCAGTGGGGCCCCTC
CTGGAAGCTTGGGCCCTTCTGAACAGATTGGGCAGGCAGGGACAACTGCAGGGCCACAGCAGCCACAACA
AGCTGGAGCCCCTCAGCCTGGGGCAGTCCCACCAGGGGTACCCCCCCCTGGACCCCATGGCCCCTCACCG
TTCCCCAACCAACCAACTCCTCCCTCAATGATGCCAGGGGCAGTGCCAGGCAGCGGGCACCCAGGCGTGG
CGGGTAATGCTCCTTTGGGTTTGCCTTTTGGCATGCCGCCTCCTCCTCCTGCTGCTCCATCCGTCATCCC
ATTCGGTAGTCTAGCTGACTCCATTAGTATTAACCTTCCCCCTCCTCCTAACCTGCATGGGCATCACCAC
CATCTCCCGTTTGCCCCGGGCACTATCCCCCCACCTAACCTGCCTGTGTCCATGGCGAACCCTCTACATC
CTAACCTGCCGGCGACCACCACCATGCCATCTTCCTTGCCTCTCGGGCCGGGGCTCGGATCCGCCGCAGC
CCAGAGCCCTGCCATTGTGGCAGCTGTTCAGGGCAACCTCCTGCCCAGTGCCAGCCCACTGCCAGACCCA
GGCACCCCGCTGCCTCCAGACCCCACAGCTCCAAGCCCAGGCACAGTCACCCCTGTGCCACCTCCACAGT
GA

Translation (1213 aa):
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSN
APLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRP
NIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPD
SYDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDE
VNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVP
NVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNL
AGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKPPQQSSASQQMLN
FPEKGKEKPADMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEF
SKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPERIEESGTEEARPEGQAADEKK
EPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKESEKSDGDPIVDPEKDKEPTEGQEEVLKEVAE
PEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
TIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPTLPPGSQPIPPTGAAGP
PTVHGLAVPPAAVASAPPGSGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPHGPSP
FPNQPTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPAAPSVIPFGSLADSISINLPPPPNLHGHHH
HLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDP
GTPLPPDPTAPSPGTVTPVPPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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