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Report for CCDS25107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25107.1 Public Mus musculus 11 Sebox 23 108 98 CCDS HistoryNCBI Gene:18292Re-query CCDS DB by CCDS ID:25107.1Re-query CCDS DB by GeneID:18292See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001130.7 ENSMUSP00000001130.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001130.7Link to Ensembl Protein Viewer:ENSMUSP00000001130.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001130Re-query CCDS DB by Protein ID:ENSMUSP00000001130
Original member NCBI NM_008759.2 NP_032785.1 Updated not alive Link to Nucleotide Sequence:NM_008759.2Link to Protein Sequence:NP_032785.1Re-query CCDS DB by Nucleotide ID:NM_008759Re-query CCDS DB by Protein ID:NP_032785
Current member NCBI NM_008759.3 NP_032785.1 Accepted alive Link to Nucleotide Sequence:NM_008759.3Link to Protein Sequence:NP_032785.1Re-query CCDS DB by Nucleotide ID:NM_008759Re-query CCDS DB by Protein ID:NP_032785Link to BLAST:NP_032785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032785.1 190 P70368 190 100% 0 0

Chromosomal Locations for CCDS 25107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78503550 78503577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78503739 78503899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78504023 78504406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCCAGTCCTGTGGAGGCATCTCCAGGCTGTGCCAGTGGGTTGGGTCCCCATCGGAGGAAGAGGACCA
CTTTCAGTGTCGGGCAGTTGGTGGAGCTGGAGCGGGTATTTGCAGCTAGGCCCTATCCTGACATCAGCAC
CCGTGAGCACCTGGCTCAGGTAACTCACCTGCCTGAAGCCAAGATCCAGGTGTGGTTCCAGAATCGGCGA
GCCAAGAGAATCAAGGACAGAAAGCCAGGAGCCCTAAACTCCAGGCTGGAGCTTCCCCCAAACTCCTGTT
CTCTTCCAGACACTCCCCAGCTACCTTGGGACCCTGGAACATCAAGCCATCCTCTGCACCCTACCAGTTC
AGCTCAGTATACTTCAGCATGCCCACCACAGACCTCCTGCCTAGGCCCCATTTTGGGTCCAGGGCAGAGT
TGGTCAGGGGCTAAAGTGGCAGCCCCATGGGGGACAAGTGGGGCTTCAGGGATTCACTCTTCTTTAGAGC
AAATTGTTCCTCAGACTTCACTGGGCAACCTGTCTGACCTTATCTATACCTCAGCCATCGTCACCAATGT
AGACCACTTCTAA

Translation (190 aa):
MASPVEASPGCASGLGPHRRKRTTFSVGQLVELERVFAARPYPDISTREHLAQVTHLPEAKIQVWFQNRR
AKRIKDRKPGALNSRLELPPNSCSLPDTPQLPWDPGTSSHPLHPTSSAQYTSACPPQTSCLGPILGPGQS
WSGAKVAAPWGTSGASGIHSSLEQIVPQTSLGNLSDLIYTSAIVTNVDHF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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