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Report for CCDS48865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48865.1 Public Mus musculus 11 Zfp207 23 108 98 CCDS HistoryNCBI Gene:22680Re-query CCDS DB by CCDS ID:48865.1Re-query CCDS DB by GeneID:22680See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165565.7 ENSMUSP00000132968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165565.7Link to Ensembl Protein Viewer:ENSMUSP00000132968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165565Re-query CCDS DB by Protein ID:ENSMUSP00000132968
Original member Current member NCBI NM_001130170.1 NP_001123642.1 Accepted alive Link to Nucleotide Sequence:NM_001130170.1Link to Protein Sequence:NP_001123642.1Re-query CCDS DB by Nucleotide ID:NM_001130170Re-query CCDS DB by Protein ID:NP_001123642Link to BLAST:NP_001123642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123642.1 479 Q9JMD0-2 479 100% 0 0

Chromosomal Locations for CCDS 48865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80383455 80383495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80385903 80386029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80387802 80387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80388978 80389145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80389255 80389330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391331 80391401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391835 80391992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80393084 80393176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80394286 80394531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395102 80395261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395390 80395550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGGTCGCAAGAAGAAGAAGCAGCTCAAGCCGTGGTGCTGGTATTGTAACAGAGATTTTGATGATGAGA
AGATCCTTATACAGCACCAAAAAGCAAAGCATTTTAAATGCCATATTTGTCATAAGAAATTATACACAGG
ACCTGGTTTAGCAATTCATTGCATGCAGGTCCATAAAGAAACCATAGATGCAGTACCAAATGCAATACCT
GGGAGAACAGACATAGAGTTGGAAATATATGGCATGGAAGGTATTCCAGAGAAAGATATGGATGAAAGAC
GGCGACTTCTTGAACAGAAAACACAAGAGAGTCAGAAAAAGAAACAACAAGATGATTCTGATGAATATGA
TGATGATGAATCTGCAGCCTCAACTTCCTTTCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATCCCA
CCAATGGCTCAGCCAGGACTGCCTCCAGTTCCAGGGGCACCAGGAATGCCTCCAGGCATACCTCCATTGA
TGCCAGGTGTTCCTCCCCTGATGCCAGGCATGCCTCCAGTGATGCCAGGAATGCCGCCTGGAATGATGCC
AATGGGTGGAATGATGCCACCTGGACCTGGAATACCACCTCTGATGCCAGGTATGCCACCAGGTATGCCC
CCACCTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAGGCTGTTTCAGCACCAGGTATTCTTA
ATAGACCACCTGCACCAACAGCAGCAGTACCTGCTCCACAGCCTCCAGTTACTAAGCCTCTTTTCCCCAG
TGCTGGACAGATGGGGACACCTGTAACAAGCTCAAGTACAGCTTCATCCAATTCAGAAAGTCTGTCTGCA
TCTTCTAAAGCTCTGTTTCCTAGCACAGCACAAGCTCAGGCAGCTGTCCAAGGACCTGTTGGTACAGATT
TTAAGCCCTTAAATAGTACTCCTGCAGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGCTTATAC
ACAGTCTACAGCGTCAACCACTAGTACAACAAACAGTACTGCAGCAAAGCCAGCAGCTTCAATAACAAGT
AAGCCTGCTACACTCACAACCACCAGTGCAACCAGTAAGTTGATCCATCCAGATGAGGATATATCACTGG
AAGAAAGAAGGGCACAGTTACCTAAATATCAGAGAAATCTTCCTCGACCAGGACAAACTCCAATTGGTAA
TCCACCAGTTGGACCAATTGGGGGTATGATGCCACCACAGCCAGGCCTGCCACAGCAGCAGGCAATGCGA
CCTCCAATGCCACCTCATGGTCAGTATGGTGGTCATCATCAAGGCATGCCAGGTTATCTTCCTGGCGCTA
TGCCACCGTATGGACAGGGACCACCAATGGTGCCCCCTTACCAAGGTGGGCCTCCTCGACCTCCAATGGG
AATGAGACCTCCTGTAATGTCGCAAGGTGGCCGTTACTGA

Translation (479 aa):
MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIP
GRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDESAASTSFQPQPVQPQQGYIP
PMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMP
PPVPRPGIPPMTQAQAVSAPGILNRPPAPTAAVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSA
SSKALFPSTAQAQAAVQGPVGTDFKPLNSTPAATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITS
KPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPPQPGLPQQQAMR
PPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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