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Report for CCDS36482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36482.1 Public Mus musculus 12 Galnt16 23 108 98 CCDS HistoryNCBI Gene:108760Re-query CCDS DB by CCDS ID:36482.1Re-query CCDS DB by GeneID:108760See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021558.7 ENSMUSP00000021558.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021558.7Link to Ensembl Protein Viewer:ENSMUSP00000021558.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021558Re-query CCDS DB by Protein ID:ENSMUSP00000021558
Original member Current member EBI ENSMUST00000218943.1 ENSMUSP00000151619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218943.1Link to Ensembl Protein Viewer:ENSMUSP00000151619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218943Re-query CCDS DB by Protein ID:ENSMUSP00000151619
Original member Current member EBI ENSMUST00000219993.1 ENSMUSP00000151829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219993.1Link to Ensembl Protein Viewer:ENSMUSP00000151829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219993Re-query CCDS DB by Protein ID:ENSMUSP00000151829
Original member Current member NCBI NM_001081421.2 NP_001074890.1 Accepted alive Link to Nucleotide Sequence:NM_001081421.2Link to Protein Sequence:NP_001074890.1Re-query CCDS DB by Nucleotide ID:NM_001081421Re-query CCDS DB by Protein ID:NP_001074890Link to BLAST:NP_001074890.1
Original member Current member NCBI NM_001361700.1 NP_001348629.1 Accepted alive Link to Nucleotide Sequence:NM_001361700.1Link to Protein Sequence:NP_001348629.1Re-query CCDS DB by Nucleotide ID:NM_001361700Re-query CCDS DB by Protein ID:NP_001348629Link to BLAST:NP_001348629.1
Original member Current member NCBI NM_001361701.1 NP_001348630.1 Accepted alive Link to Nucleotide Sequence:NM_001361701.1Link to Protein Sequence:NP_001348630.1Re-query CCDS DB by Nucleotide ID:NM_001361701Re-query CCDS DB by Protein ID:NP_001348630Link to BLAST:NP_001348630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074890.1 558 Q9JJ61 558 100% 0 0
NP_001348629.1 558 Q9JJ61 558 100% 0 0
NP_001348630.1 558 Q9JJ61 558 100% 0 0

Chromosomal Locations for CCDS 36482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80519169 80519345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80572299 80572456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80575859 80575957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80576502 80576569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80577388 80577453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80579965 80580086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80581222 80581309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80583650 80583734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80584013 80584116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80588459 80588585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80590595 80590687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80592401 80592484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80597081 80597222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80598018 80598143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80601695 80601832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGAGGAAGATCCGCGCCAATGCCATCGCCATCCTGACCGTAGCCTGGATCCTGGGCACTTTCTACTACT
TATGGCAGGACAACCGAGCCCATGCAGCATCCTCCAGCGGCCGCGGCGCGCAGAGGGCCGGCGGGAGACC
AGAGCAGCTCCGCGAGGACCGCACCATTCCGCTCATTGTGACAGGAACACCCTCAAAGGGCTTTGATGAG
AAGGCGTACCTGTCAGCCAAGCAGCTGAAGCCTGGAGAGGACCCATACAGACAACATGCCTTCAACCAAC
TGGAGAGTGACAAACTGAGCTCAGACCGACCCATCAGGGACACCCGCCATTACAGTTGCCCATCCTTGTC
CTATTCTTCGGACCTGCCGGCCACCAGTGTCATCATCACCTTCCACAACGAGGCTCGCTCCACACTCCTG
CGCACAGTGAAGAGCGTCCTGAACCGAACTCCTGCCAGCTTGATCCAGGAGATCATTTTAGTGGATGACT
TCAGTTCGGATCCTGAAGACTGTTTGCTTCTGACCAGGATCCCCAAGGTCAAGTGCCTTCGCAATGACAA
ACGGGAAGGACTGATCCGGTCCCGGGTTCGTGGGGCAGATGTGGCAGGAGCCACAGTTCTCACTTTTCTG
GATAGTCACTGTGAGGTGAATGTGGAGTGGCTGCAGCCAATGCTGCAGCGGGTGATGGAGGACCACACCC
GTGTGGTGAGCCCCATCATCGACGTCATCAGCTTGGACAATTTTGCCTACCTTGCAGCATCTGCAGATCT
TCGAGGAGGGTTTGACTGGAGTCTGCATTTCAAGTGGGAGCAGATCCCGCTGGAGCAGAAGATGACCCGG
ACTGACCCCACTAAACCCATCAGGACACCTGTTATAGCTGGAGGAATCTTCGTGATTGACAAGTCCTGGT
TTAACCATCTGGGAAAGTATGATGCCCAGATGGACATCTGGGGAGGAGAGAATTTTGAACTCTCCTTCAG
GGTATGGATGTGTGGTGGCAGCTTGGAGATTGTGCCCTGCAGCCGAGTGGGCCATGTCTTCAGGAAGCGG
CATCCCTACAACTTCCCCGAGGGCAATGCCCTCACCTATATCAGGAATACAAAGCGAACGGCAGAGGTGT
GGATGGACGAGTACAAACAGTATTATTATGAGGCCCGGCCCTCAGCCATCGGGAAGGCCTTTGGCAGTGT
GGCCACGCGGATCGAGCAGAGGAAGAAGATGGACTGTAAGTCCTTCCGCTGGTACCTGGAGAACGTCTAT
CCCGAGCTCACTGTCCCCGTGAAGGAAGTGCTCCCTGGTGTCATTAAGCAAGGAGTTAACTGCTTAGAAT
CCCAAGGCCAGAACACAGCTGGTGACCTCCTGCTTGGAATGGGGATATGCAGAGGGTCAGCCAAGAGCCC
ACCACCAGCCCAGGCATGGTTATTTAGCGATCACCTTATCCAGCAGCAGGGGAAATGCCTGGCTGCCACC
TCCACCTTAATGTCTTCCCCTGGATCCCCAGTCATACTGCAAACGTGTAACCCTAAAGAAGGCAAGCAGA
AATGGAGAAGGAAAGGATCTTTCATCCAGCATTCAGTCAGCGGCCTCTGCCTGGAGACAAAGCCTGCCCA
GCTGGTGACCAGCAAATGTCAGACAGATGCCCAGGCCCAGCAATGGCAGCTGCTGCCACACACATGA

Translation (558 aa):
MRKIRANAIAILTVAWILGTFYYLWQDNRAHAASSSGRGAQRAGGRPEQLREDRTIPLIVTGTPSKGFDE
KAYLSAKQLKPGEDPYRQHAFNQLESDKLSSDRPIRDTRHYSCPSLSYSSDLPATSVIITFHNEARSTLL
RTVKSVLNRTPASLIQEIILVDDFSSDPEDCLLLTRIPKVKCLRNDKREGLIRSRVRGADVAGATVLTFL
DSHCEVNVEWLQPMLQRVMEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQKMTR
TDPTKPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGSLEIVPCSRVGHVFRKR
HPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGKAFGSVATRIEQRKKMDCKSFRWYLENVY
PELTVPVKEVLPGVIKQGVNCLESQGQNTAGDLLLGMGICRGSAKSPPPAQAWLFSDHLIQQQGKCLAAT
STLMSSPGSPVILQTCNPKEGKQKWRRKGSFIQHSVSGLCLETKPAQLVTSKCQTDAQAQQWQLLPHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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