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Report for CCDS26213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26213.1 Public Mus musculus 12 Sp8 23 108 98 CCDS HistoryNCBI Gene:320145Re-query CCDS DB by CCDS ID:26213.1Re-query CCDS DB by GeneID:320145See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26213.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063918.3 ENSMUSP00000065746.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063918.3Link to Ensembl Protein Viewer:ENSMUSP00000065746.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063918Re-query CCDS DB by Protein ID:ENSMUSP00000065746
Original member Current member NCBI NM_177082.4 NP_796056.2 Accepted alive Link to Nucleotide Sequence:NM_177082.4Link to Protein Sequence:NP_796056.2Re-query CCDS DB by Nucleotide ID:NM_177082Re-query CCDS DB by Protein ID:NP_796056Link to BLAST:NP_796056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796056.2 486 Q8BMJ8 486 100% 0 0

Chromosomal Locations for CCDS 26213.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118848412 118849872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTGTCGGACAGCTCTT
CTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGT
GGGTTCCAGTCTCTCTAGCTTCGGTGTGTCGGGGGCCTCCCGGAACGGCGGCTCCTCCTCAGCCGCAGCG
GCGGCAGCGGCGGCAGCAGCGGCGGCCGCAGCCCTGGTGTCCGACTCTTTTAGCTGCGGAGGCTCGCCCG
GCTCCAGCGCCTTCTCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCAGCAGCTGCGGCGGCTGCCGCTTC
CAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGGGGGGCAGCGGCGGCGGC
GGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACTCGCAGGATAGCTCCCATCAGCCAGTGTTTATCTCCA
AGGTGCACACGTCGGTGGACGGACTGCAGGGTATCTACCCGCGCGTGGGAATGGCGCACCCGTATGAGTC
CTGGTTCAAGCCTTCGCACCCGGGCCTTGGCGCCGCGGCCGACGTGGGCTCCGCGGGCGCCTCCAGCTGG
TGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCTGCCCGGCTCGCTGC
ACCCGGCGGCCGGGGGCCTTCAGACGTCGCTGCATTCACCGCTGGGAGGCTACAACTCGGATTATTCCGG
CCTGAGCCACTCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATG
GACGGTTTCAAGCCGGTATTGCCCGGCTCTTACCCCGATTCCGCCCCGTCGCCGCTGGCCGGCGCGGGCA
GCTCCATGCTGAGCGCGGGGCCCGCGGCGCAGTTAGGGGGGTCCCCACGCTCGTCCGCTCGCCGCTACTC
CGGCCGCGCCACTTGCGACTGCCCCAACTGCCAGGAGGCTGAGCGGCTGGGCCCAGCGGGAGCGAGCCTG
CGTCGCAAAGGGCTGCATAGCTGCCACATCCCGGGCTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGA
AGGCGCACCTGCGTTGGCACACCGGCGAGCGGCCGTTCGTGTGCAATTGGCTGTTCTGCGGTAAGCGCTT
TACGCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACGGGCGAGAAGCGCTTCGCCTGCCCGGTG
TGCAACAAACGCTTCATGCGCAGCGACCACCTGAGCAAGCACGTGAAGACACACAGTGGTGGCGGCGGCT
CGGCGGGCTCCGGCGGCGGCAAGAAAGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCCCTCC
TTGCCACTCCCCTGAGCTGTTGCAGCCTCCAGAGCCGGGCCACCGCAACGGCCTGGAGTGA

Translation (486 aa):
MLAATCNKIGSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSGSCNVVGSSLSSFGVSGASRNGGSSSAAA
AAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGG
GGGGGGGSGAHSQDSSHQPVFISKVHTSVDGLQGIYPRVGMAHPYESWFKPSHPGLGAAADVGSAGASSW
WDVGAGWIDVQNPNGAAALPGSLHPAAGGLQTSLHSPLGGYNSDYSGLSHSAFSSGASSHLLSPAGQHLM
DGFKPVLPGSYPDSAPSPLAGAGSSMLSAGPAAQLGGSPRSSARRYSGRATCDCPNCQEAERLGPAGASL
RRKGLHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPV
CNKRFMRSDHLSKHVKTHSGGGGSAGSGGGKKGSDTDSEHSAAGSPPCHSPELLQPPEPGHRNGLE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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