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Report for CCDS26377.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26377.2 Public Mus musculus 13 Ripor2 23 108 98 CCDS HistoryNCBI Gene:193385Re-query CCDS DB by CCDS ID:26377.2Re-query CCDS DB by GeneID:193385See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26377.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091694.9 ENSMUSP00000089286.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091694.9Link to Ensembl Protein Viewer:ENSMUSP00000089286.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091694Re-query CCDS DB by Protein ID:ENSMUSP00000089286
Original member Current member NCBI NM_178658.5 NP_848773.3 Accepted alive Link to Nucleotide Sequence:NM_178658.5Link to Protein Sequence:NP_848773.3Re-query CCDS DB by Nucleotide ID:NM_178658Re-query CCDS DB by Protein ID:NP_848773Link to BLAST:NP_848773.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848773.3 633 Q80U16-5 633 100% 0 0

Chromosomal Locations for CCDS 26377.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24614690 24614747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24669960 24670086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24671755 24671910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24673032 24673110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24674647 24674670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24675775 24675828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24677724 24677873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24680628 24680691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24689466 24689509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24693766 24693891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24694117 24694265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24695573 24695702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24701062 24701730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24704770 24704841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGCAATTCCTTGACCCTGAGGATCTTCTGGATGAAGAGGATGACATTTTTGGCGAAGGACTGCCAACCA
GACTCCCAGAAATCATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAG
CCAGTCCTTCGCAGGTTTCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCC
TCGGCTCTCAAGAAGCCTCAGGCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTC
CCAAGGAGCCTCAGCCGAAGAGAGTGGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCT
GGAGTTTCACCAGACGGAGCTGGACAAATTGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTG
GGTGTGCTGTATGACCTAGACAAGCAAATTAAAACGATTGAGAGATACATGCGACGCCTGGAGTTTCACA
TTAGTAAGGTAGACGAGCTCTATGAAGCCTATTGTATCCAACGGCGTCTCCAAGATGGTGCCAGCAAAAT
GAAGCAAGCCTTCGCGACGTCCCCTGCCAGCAAGGCTGCCCGGGAGAGTCTGTCTGAGATCAACCGCAGC
TACAAGGAATACACGGAGAACATGTGTGCCATTGAAGCGGAGTTGGAGAGTCTGCTGGGAGAATTCTCCA
TCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCAATATGAAATTTTCATGAAGTA
TGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGAGCTGGGATGGAGCAGAA
ACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAAGGACTGGCGACTC
ACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGTGGTGGCTGT
TGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGGAGGAC
ACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAGG
GCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTTCAAATCTGCCAGATGACATCTTTGAGAG
TGGAAAGGCTGCAGAGGAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTC
TTCACCTCCAGCTCAGCCACCTCCCCCTCCAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCG
CAGAGCTTACCCACAGCAGCCTGTCCTCACAAAATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAG
GAATTCCTTGGGTGAGGACCATGAGCCCAAGTCCCACCCAAAGAGTGATACGGTAGAGCCCGGGAAGCCG
GGTGTGGCTACAAGGTCTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGG
AATCGGATGAGGCCTCTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACT
GGTGAAGAGGCTCACCTCGGCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGT
AGCGAGTCTGAGGCTGGCCGGTCCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTG
CATTAGACCCACACAAGAAGCAGTACAAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGA
TGTTCTCAAAGATGCTAAACATCTTGAGGATCAGAGACTCAATGATGCTGCTTCCCGGATGGAGATCACA
GAGGGTGAATGA

Translation (633 aa):
MQFLDPEDLLDEEDDIFGEGLPTRLPEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENA
SALKKPQAKLKKMHNLGHKNNNTPKEPQPKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRL
GVLYDLDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLSEINRS
YKEYTENMCAIEAELESLLGEFSIKMKGLAGFARLCPGDQYEIFMKYGRQRWKLKGKIEVNGKQSWDGAE
TVFLPLIVGFISIKVTELKGLATHILVGSVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVED
TTPSSGPGNKTAALQRRMSMYSQGTPETPTFKDQSFFSNLPDDIFESGKAAEEKRPLSLSFSDLQDGDCV
FTSSSATSPSSSHSAHPEITITPAELTHSSLSSQNEGTEDSSSASSRNSLGEDHEPKSHPKSDTVEPGKP
GVATRSGTESLFLESSVAEALLQESDEASELKPVELDTFEGNITKQLVKRLTSAEGPVTTDKLFFEGSVG
SESEAGRSFLDGSLEDAFNGLFLALDPHKKQYKEFQDLNQEVTHLDDVLKDAKHLEDQRLNDAASRMEIT
EGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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