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Report for CCDS26808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26808.1 Public Mus musculus 14 Abhd6 23 108 98 CCDS HistoryNCBI Gene:66082Re-query CCDS DB by CCDS ID:26808.1Re-query CCDS DB by GeneID:66082See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026313.3 ENSMUSP00000026313.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026313.3Link to Ensembl Protein Viewer:ENSMUSP00000026313.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026313Re-query CCDS DB by Protein ID:ENSMUSP00000026313
Original member Current member EBI ENSMUST00000166497.8 ENSMUSP00000129169.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166497.8Link to Ensembl Protein Viewer:ENSMUSP00000129169.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166497Re-query CCDS DB by Protein ID:ENSMUSP00000129169
Original member Current member NCBI NM_001331064.1 NP_001317993.1 Accepted alive Link to Nucleotide Sequence:NM_001331064.1Link to Protein Sequence:NP_001317993.1Re-query CCDS DB by Nucleotide ID:NM_001331064Re-query CCDS DB by Protein ID:NP_001317993Link to BLAST:NP_001317993.1
Original member Current member NCBI NM_025341.4 NP_079617.2 Accepted alive Link to Nucleotide Sequence:NM_025341.4Link to Protein Sequence:NP_079617.2Re-query CCDS DB by Nucleotide ID:NM_025341Re-query CCDS DB by Protein ID:NP_079617Link to BLAST:NP_079617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317993.1 336 Q8R2Y0-1 336 100% 0 0
NP_079617.2 336 Q8R2Y0-1 336 100% 0 0

Chromosomal Locations for CCDS 26808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8028271 8028389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8039748 8039904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8041119 8041232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8042694 8042826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8045468 8045625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8049574 8049628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8049808 8049908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8055471 8055644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGATCTCGATGTGGTTAACATGTTTGTGATTGCGGGTGGGACCCTGGCCATTCCAATCCTGGCATTTG
TTGCGTCTTTCCTCCTGTGGCCTTCAGCACTGATAAGAATCTATTATTGGTACTGGCGGAGGACACTGGG
CATGCAAGTTCGCTACGCACACCATGAGGACTATCAGTTCTGTTACTCCTTCCGGGGCAGGCCAGGACAC
AAGCCATCCATCCTTATGCTCCATGGATTCTCCGCACACAAGGACATGTGGCTCAGCGTGGTCAAGTTCC
TTCCGAAGAACCTGCACTTGGTCTGTGTGGACATGCCTGGGCATGAAGGCACCACCCGCTCCTCCCTGGA
TGACCTGTCCATAGTGGGGCAAGTTAAAAGGATACATCAGTTTGTAGAATGCCTTAAGCTGAACAAAAAG
CCCTTTCACCTTATAGGCACCTCCATGGGTGGCCACGTGGCTGGAGTATATGCCGCTTACTACCCATCTG
ATGTCTGCAGCCTGTCTCTCGTGTGTCCTGCTGGCCTGCAGTACTCAACTGACAATCCTTTTGTACAACG
GCTCAAAGAGCTGGAGGAGTCAGCTGCCATTCAGAAGATTCCCTTGATCCCATCCACCCCGGAAGAGATG
AGTGAGATGCTGCAGCTCTGCTCCTATGTCCGCTTCAAGGTGCCCCAGCAGATCCTTCAAGGTCTTGTCG
ATGTTCGCATTCCTCATAACAGCTTCTACCGGAAATTGTTTTTGGAAATCGTCAATGAGAAATCCAGATA
CTCTCTGCATGAGAATATGGACAAGATCAAGGTCCCGACACAGATCATTTGGGGGAAACAAGACCAGGTG
CTTGATGTGTCCGGGGCAGACATATTAGCCAAGTCAATCTCTAACTCCCAGGTAGAGGTTCTGGAAAACT
GTGGCCATTCGGTAGTGATGGAGAGACCGAGGAAGACAGCCAAGCTCATTGTCGACTTTTTAGCTTCTGT
GCATAACACAGACAACAAGAAGCTGAACTGA

Translation (336 aa):
MDLDVVNMFVIAGGTLAIPILAFVASFLLWPSALIRIYYWYWRRTLGMQVRYAHHEDYQFCYSFRGRPGH
KPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIVGQVKRIHQFVECLKLNKK
PFHLIGTSMGGHVAGVYAAYYPSDVCSLSLVCPAGLQYSTDNPFVQRLKELEESAAIQKIPLIPSTPEEM
SEMLQLCSYVRFKVPQQILQGLVDVRIPHNSFYRKLFLEIVNEKSRYSLHENMDKIKVPTQIIWGKQDQV
LDVSGADILAKSISNSQVEVLENCGHSVVMERPRKTAKLIVDFLASVHNTDNKKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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