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Report for CCDS26854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26854.1 Public Mus musculus 14 Ndst2 23 108 98 CCDS HistoryNCBI Gene:17423Re-query CCDS DB by CCDS ID:26854.1Re-query CCDS DB by GeneID:17423See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047490.5 ENSMUSP00000040227.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047490.5Link to Ensembl Protein Viewer:ENSMUSP00000040227.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047490Re-query CCDS DB by Protein ID:ENSMUSP00000040227
Original member Current member EBI ENSMUST00000223679.1 ENSMUSP00000153036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223679.1Link to Ensembl Protein Viewer:ENSMUSP00000153036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223679Re-query CCDS DB by Protein ID:ENSMUSP00000153036
Original member Current member EBI ENSMUST00000225000.1 ENSMUSP00000153141.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225000.1Link to Ensembl Protein Viewer:ENSMUSP00000153141.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225000Re-query CCDS DB by Protein ID:ENSMUSP00000153141
Original member Current member NCBI NM_010811.2 NP_034941.2 Accepted alive Link to Nucleotide Sequence:NM_010811.2Link to Protein Sequence:NP_034941.2Re-query CCDS DB by Nucleotide ID:NM_010811Re-query CCDS DB by Protein ID:NP_034941Link to BLAST:NP_034941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034941.2 883 P52850 883 100% 0 0

Chromosomal Locations for CCDS 26854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20724235 20724360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20724461 20724563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20724711 20724820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20724908 20725078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20725279 20725453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20725574 20725697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20726994 20727090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20727178 20727360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20727487 20727615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20728076 20728261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20728451 20728605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20728876 20728963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20729166 20730170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGCTCCAGCTGTGGAAGGTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGCCTCATACTGCTGCTGA
TTGGTTTCAGTCTTGTCTCCATGGGATTCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCAAGGAACC
CTTGCCTCTGCCCTTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCCCTGGCCCTGCACGGCCACCAGTC
CCACCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTGTGGTCCTTGTGTTTGTGGAAAGTG
CATACTCACAACTGGGGCAGGAGATTGTGGCCATCTTGGAATCTAGTCGCTTTCGTTATAGCACTGAGCT
AGCACCTGGCCGAGGGGATATGCCCACACTGACTGATCATACCCATGGCCGCTATGTCTTAGTCATCTAT
GAGAACCTTCTAAAGTATGTGAACTTAGATGCCTGGAGCCGGGAACTGCTGGACCGGTACTGTGTGGAGT
ATGGCGTGGGTATCATTGGCTTTTTCCGAGCCCGCGAGCACAGCCTGCTGAGTGCCCAGCTCAAGGGCTT
TCCCCTTTTCCTACACTCAAACCTGGGGCTCCGGGACTACCAAGTGAATCCTTCCGCCCCTCTACTACAT
CTCACCCGCCCTAGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGACTGGACCATCTTCCAGTCCAATC
ACAGCACTTATGAGCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCT
TCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACTTGGGGCTTCATGATGGCATACAGCGGGTGCTGTTT
GGACATGGCCTTTCTTTTTGGCTTCACAAACTTGTTTTTGTTGATGCTGTTGCATACCTCACCGGGAAGC
GCCTCTGCCTGGACCTTGACCGCTACATCTTAGTAGATATCGATGACATCTTTGTGGGCAAAGAAGGTAC
TCGCATGAAGGTGGCTGATGTTGAGGCTTTGTTGACCACTCAGAACAAACTCAGGACCTTAGTCCCCAAC
TTCACCTTCAACTTGGGCTTCTCGGGCAAGTTCTATCATACCGGGACAGAAGAGGAGGATGCTGGGGACG
ACATGCTGCTGAAGCACCGCAGGGAGTTCTGGTGGTTCCCTCACATGTGGAGCCACATGCAGCCACACCT
CTTCCACAACCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGAGCATGGGATT
CCTACGGATCTGGGGTATGCTGTGGCCCCCCACCACTCTGGCGTGTACCCCATCCACTCGCAGCTCTATG
AGGCCTGGAAATCTGTCTGGGGCATCCAGGTGACCAGCACTGAGGAGTACCCCCATCTGCGTCCTGCTCG
CTACCGCCGTGGCTTCATTCACAATGGCATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTTCACCCAC
ACGATCTTCTATAATGAGTATCCTGGAGGTTCTCGTGAACTAGATCGAAGCATCCGAGGTGGAGAGCTCT
TTCTGACAGTGCTGCTTAATCCGATCAGTGTCTTTATGACCCATCTGTCAAACTATGGAAATGACCGGCT
GGGCCTGTACACCTTTGAGAGCCTGGTGCGCTTCCTCCAGTGCTGGACACGACTGCGCCTACAGACCCTT
CCTCCTGTCCCTCTTGCACAAAAGTACTTTGAACTTTTTCCTCAGGAACGAAGCCCCCTGTGGCAGAATC
CCTGTGATGACAAGAGGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTGATCGACTCCCCAAGTTCCT
CATTGTGGGACCACAGAAGACAGGCACCACGGCTATTCACTTCTTCCTGAGCCTGCACCCAGCTGTCACA
AGCAGTTTTCCCAGCCCCAGCACCTTTGAGGAGATTCAGTTCTTCAATGGCCCTAATTACCACAAGGGGA
TCGACTGGTACATGGACTTCTTCCCTGTTCCTTCCAATGCCAGCACTGACTTCCTGTTTGAAAAAAGTGC
CACCTACTTTGACTCGGAGGTCGTACCACGGCGGGGGGCTGCCCTTCTGCCAAGAGCCAAGATAATCACT
GTGCTTATCAACCCTGCTGACAGGGCCTACTCCTGGTACCAGCACCAGCGAGCACATGGAGACCCCATTG
CTCTGAACTACACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCCCCTCTGCTACTTCGCTCCTTGCA
GAACCGTTGTCTTGTTCCTGGCTACTATTCTACCCATCTTCAACGCTGGCTGACTTACTATCCCTCTGGA
CAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGT
TCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTCAGGTTTGATGAAGATAAAGGATTTTGGTG
CCAGGGCCTTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGAC
ATGGAGTCTCGCCTTTTCCTTACGGATTTTTTCCGGAACCATAATTTGGAGCTATCAAAGCTGCTGAGTC
GGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGA

Translation (883 aa):
MLQLWKVVRPARQLELHRLILLLIGFSLVSMGFLAYYVSTSPKAKEPLPLPLGDCSSSGAAGPGPARPPV
PPRPQRPPETTRTEPVVLVFVESAYSQLGQEIVAILESSRFRYSTELAPGRGDMPTLTDHTHGRYVLVIY
ENLLKYVNLDAWSRELLDRYCVEYGVGIIGFFRAREHSLLSAQLKGFPLFLHSNLGLRDYQVNPSAPLLH
LTRPSRLEPGPLPGDDWTIFQSNHSTYEPVLIASHRPAELSMPGPVLRRARLPTVVQDLGLHDGIQRVLF
GHGLSFWLHKLVFVDAVAYLTGKRLCLDLDRYILVDIDDIFVGKEGTRMKVADVEALLTTQNKLRTLVPN
FTFNLGFSGKFYHTGTEEEDAGDDMLLKHRREFWWFPHMWSHMQPHLFHNRSVLADQMRLNKQFALEHGI
PTDLGYAVAPHHSGVYPIHSQLYEAWKSVWGIQVTSTEEYPHLRPARYRRGFIHNGIMVLPRQTCGLFTH
TIFYNEYPGGSRELDRSIRGGELFLTVLLNPISVFMTHLSNYGNDRLGLYTFESLVRFLQCWTRLRLQTL
PPVPLAQKYFELFPQERSPLWQNPCDDKRHKDIWSKEKTCDRLPKFLIVGPQKTGTTAIHFFLSLHPAVT
SSFPSPSTFEEIQFFNGPNYHKGIDWYMDFFPVPSNASTDFLFEKSATYFDSEVVPRRGAALLPRAKIIT
VLINPADRAYSWYQHQRAHGDPIALNYTFYQVISASSQAPLLLRSLQNRCLVPGYYSTHLQRWLTYYPSG
QLLIMDGQELRVNPAASMEIIQKFLGITPFLNYTRTLRFDEDKGFWCQGLEGGKTRCLGRSKGRRYPDMD
MESRLFLTDFFRNHNLELSKLLSRLGQPAPLWLREELQHSSVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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