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Report for CCDS27033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27033.1 Public Mus musculus 14 Or6s1 23 108 98 CCDS HistoryNCBI Gene:404319Re-query CCDS DB by CCDS ID:27033.1Re-query CCDS DB by GeneID:404319See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048478.5 ENSMUSP00000036596.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048478.5Link to Ensembl Protein Viewer:ENSMUSP00000036596.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048478Re-query CCDS DB by Protein ID:ENSMUSP00000036596
Original member Current member EBI ENSMUST00000216202.1 ENSMUSP00000150180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216202.1Link to Ensembl Protein Viewer:ENSMUSP00000150180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216202Re-query CCDS DB by Protein ID:ENSMUSP00000150180
Original member Current member NCBI NM_207558.2 NP_997441.2 Accepted alive Link to Nucleotide Sequence:NM_207558.2Link to Protein Sequence:NP_997441.2Re-query CCDS DB by Nucleotide ID:NM_207558Re-query CCDS DB by Protein ID:NP_997441Link to BLAST:NP_997441.2

Chromosomal Locations for CCDS 27033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51070396 51071391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGCTCCACGTGCGAACCAGAGTGTCGGCACTACGGAGTTTGTCCTGGCAGGCTTCCCGAATCTCAACA
GCACAGGAGCGGAAGTGTTCTCCGTGTTCCTTTTCGTTTACCTGTTGACTCTAACAGGCAACACGTTGAT
TGTTGTCTTGGTGGGGGCGGATCACCGCCTGCAGACACCCATGTATTTCTTCCTGGCTAACTTGTCCTGC
CTCGAGATTCTGATCACTTCTGTCATCATTCCGAAGATGCTGAGCAATTTCCTCTCGAGACGGCACACCA
TTTCCTTTGCTGCCTGTATCACTCAGTTTTACTTTTACTTCTTTCTGGGGGCCTCTGAGTTCCTACTGTT
GGCCGTCATGTCTGTGGATCGCTACCTGGCCATCTGCCGTCCTCTGCATTACCCCTTGCTAATGAATGGA
GCCGTGTGCTTTCGGGTGGCCTTGGCCTGCTGGATGGGGGGACTCCTCCCTGTGCTTGGCCCCACAGTGG
CTGTGGCCTTGCTTCCTTTCTGCAAACAGGGTGCTGTGGTTCAGCACTTCTTCTGTGACAGTGGACCCTT
GCTTCACCTGGCATGTACCAACACCACGAGACTGGAGGAGGCTGACTTTGTCCTGGCCTTTCTTGTCATC
ATGTCCTCGCTCACCATTACTGGTGCGTCCTATGGCCACATAGTCCTGGCGGTCCTGCGCATCCCCTCTG
CTTCCGGTCGGCAGAAGGCTTTCTCCACCTGTACTTCTCACTTGATGGTGGTAACCCTCTTCTATGGAAG
TGCCATTTTCCTCTACGTAAGGCCATCCCAGAGCGGCTCTGTGGATACTAACTGGTCTGTAACCGTGATA
ACAACATTTGTGACCCCTCTGCTGAATCCTTTTATCTATGCCTTGCGCAACGATCAAGTCAAGGAAGCTT
TGAAAGAGATGTTCAGGAAGGTAGTCGCCAAGCTGTTAGAACAGTCTTTACTTGGGGATAGTTTGAGAAA
GAAGACAGCCAGTTGA

Translation (331 aa):
MAPRANQSVGTTEFVLAGFPNLNSTGAEVFSVFLFVYLLTLTGNTLIVVLVGADHRLQTPMYFFLANLSC
LEILITSVIIPKMLSNFLSRRHTISFAACITQFYFYFFLGASEFLLLAVMSVDRYLAICRPLHYPLLMNG
AVCFRVALACWMGGLLPVLGPTVAVALLPFCKQGAVVQHFFCDSGPLLHLACTNTTRLEEADFVLAFLVI
MSSLTITGASYGHIVLAVLRIPSASGRQKAFSTCTSHLMVVTLFYGSAIFLYVRPSQSGSVDTNWSVTVI
TTFVTPLLNPFIYALRNDQVKEALKEMFRKVVAKLLEQSLLGDSLRKKTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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