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Report for CCDS27215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27215.1 Public Mus musculus 14 Pbk 23 108 98 CCDS HistoryNCBI Gene:52033Re-query CCDS DB by CCDS ID:27215.1Re-query CCDS DB by GeneID:52033See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022612.9 ENSMUSP00000022612.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022612.9Link to Ensembl Protein Viewer:ENSMUSP00000022612.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022612Re-query CCDS DB by Protein ID:ENSMUSP00000022612
Original member NCBI NM_023209.2 NP_075698.1 Updated not alive Link to Nucleotide Sequence:NM_023209.2Link to Protein Sequence:NP_075698.1Re-query CCDS DB by Nucleotide ID:NM_023209Re-query CCDS DB by Protein ID:NP_075698
Current member NCBI NM_023209.3 NP_075698.1 Accepted alive Link to Nucleotide Sequence:NM_023209.3Link to Protein Sequence:NP_075698.1Re-query CCDS DB by Nucleotide ID:NM_023209Re-query CCDS DB by Protein ID:NP_075698Link to BLAST:NP_075698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075698.1 330 Q9JJ78 330 100% 0 0

Chromosomal Locations for CCDS 27215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65809235 65809289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65811931 65812024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65812966 65813108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65813807 65813976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65815172 65815301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65816600 65816776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65817190 65817413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGAAGGAATTAATAATTTCAAGACGCCAAACAAATCTGAAAAAAGGAAATCTGTATTATGTTCCACTC
CATGTGTAAATATCCCTGCCTCTCCATTTATGCAGAAGCTTGGCTTTGGGACTGGGGTCAGCGTTTACCT
AATGAAAAGATCTCCAAGAGGGTTGTCTCATTCTCCTTGGGCCGTGAAAAAGATAAGTCTTTTATGCGAT
GATCATTATCGAACTGTGTATCAGAAGAGACTAACTGATGAAGCTAAGATTTTAAAAAACCTTAATCACC
CAAACATTATAGGATATCGTGCTTTTACTGAAGCCAGTGATGGTAGTCTGTGCCTTGCTATGGAGTATGG
AGGTGAAAAGTCTCTGAATGACTTAATAGAAGAGCGGAACAAAGACAGTGGAAGTCCTTTTCCAGCAGCT
GTAATTCTCAGAGTTGCTTTGCACATGGCCAGAGGGCTAAAGTACCTGCACCAAGAAAAGAAGCTGCTTC
ATGGAGACATAAAGTCTTCAAATGTTGTAATTAAAGGTGATTTTGAAACAATTAAAATCTGTGATGTAGG
AGTCTCTCTGCCATTGGATGAAAATATGACTGTGACTGATCCTGAGGCCTGTTATATTGGTACTGAGCCA
TGGAAACCCAAGGAAGCGTTGGAAGAAAATGGCATCATTACTGACAAGGCAGATGTGTTTGCTTTTGGCC
TTACTCTGTGGGAAATGATGACTTTATGTATTCCACACGTCAATCTTCCAGATGATGATGTTGATGAAGA
TGCAACCTTTGATGAGAGTGACTTCGATGATGAAGCATATTATGCAGCTCTGGGGACAAGGCCATCCATC
AACATGGAAGAGCTGGATGACTCCTACCAGAAGGCCATTGAACTCTTCTGTGTGTGCACTAATGAGGATC
CTAAAGATCGCCCGTCTGCTGCACACATCGTTGAAGCTTTGGAACTAGATGGCCAATGTTGTGGTCTAAG
CTCAAAGCATTAA

Translation (330 aa):
MEGINNFKTPNKSEKRKSVLCSTPCVNIPASPFMQKLGFGTGVSVYLMKRSPRGLSHSPWAVKKISLLCD
DHYRTVYQKRLTDEAKILKNLNHPNIIGYRAFTEASDGSLCLAMEYGGEKSLNDLIEERNKDSGSPFPAA
VILRVALHMARGLKYLHQEKKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTVTDPEACYIGTEP
WKPKEALEENGIITDKADVFAFGLTLWEMMTLCIPHVNLPDDDVDEDATFDESDFDDEAYYAALGTRPSI
NMEELDDSYQKAIELFCVCTNEDPKDRPSAAHIVEALELDGQCCGLSSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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