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Report for CCDS27480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27480.1 Public Mus musculus 15 Has2 23 108 98 CCDS HistoryNCBI Gene:15117Re-query CCDS DB by CCDS ID:27480.1Re-query CCDS DB by GeneID:15117See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050544.7 ENSMUSP00000062212.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050544.7Link to Ensembl Protein Viewer:ENSMUSP00000062212.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050544Re-query CCDS DB by Protein ID:ENSMUSP00000062212
Original member Current member NCBI NM_008216.3 NP_032242.3 Accepted alive Link to Nucleotide Sequence:NM_008216.3Link to Protein Sequence:NP_032242.3Re-query CCDS DB by Nucleotide ID:NM_008216Re-query CCDS DB by Protein ID:NP_032242Link to BLAST:NP_032242.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032242.3 552 P70312 552 100% 0 0

Chromosomal Locations for CCDS 27480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 56667659 56668588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56669889 56669990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56681578 56682204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCATTGTGAGAGGTTTCTATGTGTCCTGAGAATAATTGGAACTACACTTTTTGGAGTGTCTCTCCTCC
TCGGAATCACAGCTGCTTATATTGTTGGCTACCAGTTTATCCAAACAGATAATTACTACTTCTCATTTGG
ACTGTACGGTGCCTTTTTAGCCTCGCATCTCATCATCCAAAGCCTCTTTGCCTTTTTGGAACACCGGAAA
ATGAAGAAGTCCCTTGAAACCCCGATTAAATTGAACAAAACGGTAGCACTCTGCATCGCTGCGTACCAAG
AGGACCCTGACTACTTACGGAAATGTTTGCAATCTGTGAAAAGGCTGACCTACCCTGGGATTAAAGTCGT
GATGGTCATCGATGGGAACTCAGACGACGACCTTTACATGATGGACATATTCAGCGAAGTTATGGGCAGG
GACAAATCGGCCACGTACATCTGGAAGAACAACTTTCATGAAAAGGGACCTGGTGAGACAGAAGAGTCCC
ATAAAGAAAGTTCACAACATGTCACCCAATTGGTCTTGTCTAACAAAAGTATTTGCATCATGCAAAAATG
GGGTGGAAAGAGAGAAGTCATGTACACAGCCTTCAGAGCACTGGGGCGAAGCGTGGATTATGTACAGGTG
TGTGACTCAGATACTATGCTTGACCCTGCCTCATCTGTGGAGATGGTGAAGGTCTTAGAGGAAGACCCTA
TGGTTGGAGGTGTTGGAGGAGATGTCCAGATTTTAAACAAGTATGATTCCTGGATCTCCTTCCTCAGCAG
CGTGAGATACTGGATGGCTTTTAATATAGAAAGGGCCTGCCAGTCTTATTTTGGCTGTGTCCAGTGCATA
AGCGGTCCTCTGGGAATGTACAGAAACTCCTTGCTGCATGAATTTGTGGAAGACTGGTACAATCAGGAAT
TCATGGGTAACCAATGCAGTTTTGGTGACGACAGGCACCTTACCAACAGGGTGTTGAGTCTGGGCTATGC
AACTAAATACACGGCTCGGTCCAAGTGCCTTACTGAAACTCCCATAGAATATCTGAGATGGCTGAACCAG
CAGACCCGTTGGAGCAAGTCCTACTTCCGAGAGTGGCTGTACAATGCCATGTGGTTTCACAAGCATCACT
TGTGGATGACCTATGAAGCTGTTATCACTGGATTCTTTCCTTTCTTTCTCATTGCCACAGTCATCCAGCT
CTTCTACAGGGGTAAAATCTGGAACATCCTCCTCTTCCTGTTAACTGTCCAGCTAGTGGGTCTCATCAAG
TCATCTTTTGCCAGCTGCCTTAGAGGAAATATCGTCATGGTATTCATGTCTCTGTATTCAGTGTTATACA
TGTCAAGTCTACTTCCTGCCAAGATGTTTGCAATTGCAACCATAAACAAAGCTGGGTGGGGCACATCTGG
AAGGAAGACCATTGTTGTTAATTTCATAGGACTTATTCCAGTGTCCGTGTGGTTTACAATCCTTCTAGGT
GGTGTAATTTTCACCATTTATAAGGAATCTAAAAAGCCATTTTCCGAATCCAAACAGACTGTTCTCATCG
TGGGAACTTTGATCTATGCATGCTACTGGGTCATGCTTTTGACTCTCTATGTGGTTCTCATCAATAAGTG
TGGCAGGCGGAAGAAGGGACAACAGTATGACATGGTGCTTGATGTATGA

Translation (552 aa):
MHCERFLCVLRIIGTTLFGVSLLLGITAAYIVGYQFIQTDNYYFSFGLYGAFLASHLIIQSLFAFLEHRK
MKKSLETPIKLNKTVALCIAAYQEDPDYLRKCLQSVKRLTYPGIKVVMVIDGNSDDDLYMMDIFSEVMGR
DKSATYIWKNNFHEKGPGETEESHKESSQHVTQLVLSNKSICIMQKWGGKREVMYTAFRALGRSVDYVQV
CDSDTMLDPASSVEMVKVLEEDPMVGGVGGDVQILNKYDSWISFLSSVRYWMAFNIERACQSYFGCVQCI
SGPLGMYRNSLLHEFVEDWYNQEFMGNQCSFGDDRHLTNRVLSLGYATKYTARSKCLTETPIEYLRWLNQ
QTRWSKSYFREWLYNAMWFHKHHLWMTYEAVITGFFPFFLIATVIQLFYRGKIWNILLFLLTVQLVGLIK
SSFASCLRGNIVMVFMSLYSVLYMSSLLPAKMFAIATINKAGWGTSGRKTIVVNFIGLIPVSVWFTILLG
GVIFTIYKESKKPFSESKQTVLIVGTLIYACYWVMLLTLYVVLINKCGRRKKGQQYDMVLDV


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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