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Report for CCDS79387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79387.1 Public Mus musculus 15 1700088E04Rik 23 108 98 CCDS HistoryNCBI Gene:27660Re-query CCDS DB by CCDS ID:79387.1Re-query CCDS DB by GeneID:27660See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190509.6 ENSMUSP00000140611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190509.6Link to Ensembl Protein Viewer:ENSMUSP00000140611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190509Re-query CCDS DB by Protein ID:ENSMUSP00000140611
Original member Current member NCBI NM_001310576.1 NP_001297505.1 Accepted alive Link to Nucleotide Sequence:NM_001310576.1Link to Protein Sequence:NP_001297505.1Re-query CCDS DB by Nucleotide ID:NM_001310576Re-query CCDS DB by Protein ID:NP_001297505Link to BLAST:NP_001297505.1

Chromosomal Locations for CCDS 79387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79135151 79135222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79135353 79135453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79135637 79135765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79136307 79136489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79140881 79140983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCTTCCCAGGAAAGGGTGGACTCGGTGACCAAAGGAACCGGGTTCCGCCGCTGCCGTAAGCAAGCAG
GTTACACGCCGGGGACTTGTGAGCTGCTCAGAGGAGGAGCCCCTCTGCCCCTGCAGTGCAACCCTACATC
CAGCCTGAGGGGCTCTCCCTCCAAGAAGGCAGCCTCAGCCATCTACCTGCCTCCCATTCTGGCCACCCAC
TCTCACCTCAGGCCTGCCAGCTTGTGCCAAGCCAATGGGGCGTACAGTCGTGAACAATTCAAGCCTCAGG
CCACCAGAGATCTGGAGAAAGAGAAACGAAGACTCCAAAATATCTTTGCCACTGGGAAGGACAAGGAGGA
ACGGAAAAAGGTTCCCCACGTGCGGCAAGAAGACCCAGCTCCAGAGCTGGACCGGTTTGATGAACTGGTG
AAAGAAATCCAAGACAGGAAAGAATTCTTGGCTGCCATGGAGGCTCTGGGGCAGGGCAGGCAGTACCGCA
GCATCATCCTGGCTGAGATCTCCCAGAAACTACGGGAAATGGAGGACATTGATCGCAGGAGGAGCAAGGA
GCTGAGGAAAGCCCTCGCCACCACTTAA

Translation (195 aa):
MASQERVDSVTKGTGFRRCRKQAGYTPGTCELLRGGAPLPLQCNPTSSLRGSPSKKAASAIYLPPILATH
SHLRPASLCQANGAYSREQFKPQATRDLEKEKRRLQNIFATGKDKEERKKVPHVRQEDPAPELDRFDELV
KEIQDRKEFLAAMEALGQGRQYRSIILAEISQKLREMEDIDRRRSKELRKALATT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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