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Report for CCDS88979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88979.1 Public Mus musculus 16 Prdm15 23 108 98 CCDS HistoryNCBI Gene:114604Re-query CCDS DB by CCDS ID:88979.1Re-query CCDS DB by GeneID:114604See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121584.7 ENSMUSP00000113791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121584.7Link to Ensembl Protein Viewer:ENSMUSP00000113791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121584Re-query CCDS DB by Protein ID:ENSMUSP00000113791
Original member NCBI NM_001359077.1 NP_001346006.1 Updated not alive Link to Nucleotide Sequence:NM_001359077.1Link to Protein Sequence:NP_001346006.1Re-query CCDS DB by Nucleotide ID:NM_001359077Re-query CCDS DB by Protein ID:NP_001346006
Current member NCBI NM_001359077.2 NP_001346006.1 Accepted alive Link to Nucleotide Sequence:NM_001359077.2Link to Protein Sequence:NP_001346006.1Re-query CCDS DB by Nucleotide ID:NM_001359077Re-query CCDS DB by Protein ID:NP_001346006Link to BLAST:NP_001346006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346006.1 1148 E9Q8T2-2 1148 100% 0 0

Chromosomal Locations for CCDS 88979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97794180 97794656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97795650 97795859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97797697 97797777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97799054 97799229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97799554 97799637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97803710 97803841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97806045 97806164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97806475 97806554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97807009 97807172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97807722 97807856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97808655 97808786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97811057 97811151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97812558 97812725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97816106 97816193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97816536 97816630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97816849 97817045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97818212 97818341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97821768 97822010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97829611 97829712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97835578 97835830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97837574 97837727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97839255 97839348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97839923 97839959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3447 nt):
ATGGCTGAAGATGGTAGTGAGGAGATCATGTTTATCTGGTGTGAAGACTGCAGCCAGTACCATGACTCGG
AGTGTCCTGAACTGGGACCTGTGGTCATGGTCAAGGACTCCTTTGTGCTGAGCAGGGCAAGGTCCTCCCT
CCCCTCTAACCTGGAGATCAGGCGCCTGGATGACGGGGCTGAAGGCGTGTTTGCAGTGACCCAGCTAGTC
AAGCGCACACAATTTGGTCCGTTTGAGTCCAGGAGAGTCGCCAAGTGGGAGAAAGAGTCGGCATTTCCTC
TGAAGGTATTTCAGAAGGACGGGCATCCTGTGTGCTTCGACACTTCCAATGAGGATGACTGCAACTGGAT
GATGCTAGTGCGACCAGCACTGGAGCCTGGGCACCAGAACCTGACAGCCTACCAACATGGCAGTGACGTG
TATTTCACCACCTCAAAGGACATTCCTGCAGGCACTGAACTGCGTGTGTGGTATGCTGCCTTTTATGCCA
AGAAGATGGACAAGCCCATGCTAAAGCAGGCCTGCTCCAGTGTTCAGGCTGCAGGCACCCCTGAGCCCAG
TGTCTCTGTGGAACCTGAGCGTGGCCAATGGGTGTGTAAGGTGTGCTCCAACACCTTCCTGGAGCTTCAG
CTCCTGAACGAGCATCTCTTGGGCCATCTGGAGCAAGCCAAAAGCCTCCCTGCAGGTGGCCAGCAGCATG
AGGCAGCTTCTGAGAAGGAGCCTGATGCACCCAGGATGGAGCCTCCCACAGCAGCCGAGAGCAAGAGCAT
CCAGAGTGTCATGGTCACCAAAGAGCCAAAGAAAAAGCCTCGAAGAGGGAGGAAACCCAAAGCATCCAAG
GTTGAGCAGCCTCTGGTCATTATCAAAGACAAGGAGCCTTCAGAGCATGTGGCAGAGATCATAACTGAGA
TCCCCCCAGATGAGCCTGTGAGTGCAACACCAGATGAACGGATCATGGAGTTAGTCTTGGGGAAGCTGGC
CGCCCCCACAAATGAAGCCAGCTCAGTGCCAAAGTTCCCACATCATCCAAGCAGCACCATTGCCCTCAAG
AGGGGCTTGGTTCTGTCCAGCAGACATGGCGTCCGGCGGAAGCTCGTCCGTCAGCTGGGTGAGCATAAAC
GCATCCATCAGTGTGGCACCTGCAGCAAGGTCTTCCAGAACAGCAGCAACCTGAGCCGGCACGTGCGCTC
GCACGGTGAGTGCGCGCACGGGGACAAGCTGTTTAAATGTGAGGAATGTTCGAAACTGTTCAGCCGTAAG
GAAAGTCTAAAGCAGCATGTTTCCTACAAGCACAGCCGGAATGAGGTGGACGGTGAGTACCGCTACCGCT
GTGGCAGCTGTGGGAAGACATTCCGAATGGAGAGTGCACTGGAGTTCCACAACTGTAGGACAGATGACAA
GACGTTCCAATGTGAGATGTGTTTCAGATTCTTCTCCACCAACAGCAACCTCTCTAAGCACAAGAAGAAA
CATGGGGACAAGAAGTTTGCCTGTGAGGTCTGCAGTAAGATGTTCTACCGCAAGGATGTTATGCTGGACC
ACCAGAGGCGACACTTGGATGGTGTGCGGCGGGTGAAGAGAGAAGACTTGGAGGCCAGCGGGGAAAGCCT
GGTTCGTTACAAGAAGGAACCTTCTGGATGCCCAGTGTGTGGCAAGGTGTTCTCCTGTCGGAGCAACATG
AACAAGCACCTGCTGACCCACGGTGACAAGAAGTACACCTGCGAGATCTGTGGGCGCAAGTTCTTCCGAG
TGGACGTACTCAGGGACCACATCCATGTCCACTTCAAGGACATCGCGCTAATGGATGACCACCAGCGGGA
GGAGTTCATTGGCAAAATTGGGATCTCCTCAGAGGAGAATGATGACAACTCTGATGAGAGCGCAGACTCT
GAGCCACACAAGTACAGCTGCAAGAGGTGCCAGCTCACTTTCGGCCGTGGGAAGGAATACCTGAAGCACA
TCATGGAGGTGCACAAGGAGAAGGGCCACGGCTGCAGCATCTGCCACCGACGCTTCGCACTCAAGGCCAC
CTACCATGCCCACATGGTCATCCACCGGGAGAACCTGCCTGACCCCAACGTGCAGAAGTACATTCACCCC
TGTGAGATCTGTGGGAGGATATTCAACAGCATTGGGAACTTGGAGCGCCACAAACTCATCCACACAGGTG
TGAAAAGCCACGCCTGTGAGCAGTGTGGGAAGTCCTTTGCCAGGAAGGACATGCTGAAAGAGCACATGCG
TGTGCATGACAACATCCGGGAGTACCTGTGCGCCGAGTGTGGGAAAGGTATGAAGACCAAGCATGCACTG
CGCCACCATATGAAGCTGCACAAAGGCATCAAGGAGTATGAGTGCAAGGAATGTCACCGCAAGTTTGCAC
AGAAGGTCAACATGCTCAAGCACTACAAACGGCACACAGGAATTAAAGACTTCATGTGTGAATTGTGTGG
GAAGACATTCAGTGAGAGGAACACAATGGAGACACACAAGCTCATCCACACAGTAGGCAAGCAGTGGACT
TGTTCCGTGTGTGACAAGAAGTACGTCACAGAGTACATGCTTCAGAAACACGTCCAGCTCACTCATGACA
AGGTGGAAGCACAGAGTTGCCAACTATGTGGCACCAAAGTGTCAACCCGGGCCTCCATGAGCAGACATAT
GCGACGCAAGCACCCCGAGGTCCTCGCTGTTCGGATTGACGATCTGGACCACCTCCCCGAGACCACCACC
ATCGATGCATCTTCCATCGGCATTGTCCAGCCTGCGCTGGGCCTGGAGCAGGAAGAACTGGCAGAAGGTA
AGCATGGAAAGGCTGCCAAGCGCAGCCACAAGAGAAAGCAGAAGCCAGAGGAAGAGGCAGGGGCTCCAGT
GCCTGAGGATACCACCTTCAGTGAATACCCCGAAAAGGAGCCAGAGTTCACAGGCAGTGTGGGTGACGAG
ACAAATTCTGCTGTACAGAGTATCCAACAGGTGGTGGTGACCCTAGGGGACCCCAATGTGACTGCTCCAT
CAAGCTCAGTTGGTCTAACCAACATCACCGTGACCCCCATCACCACTGCAGCTGGAACTCAGTTTACCAA
TTTACAGCCAGTGGCTGTTGGACATCTTACCAACCCTGATCGCCAGCTACAGCTAGATAACTCCATCCTG
ACTGTGACCTTTGATACTGTCAGTGGCTCCGCCATGTTGCACAACCGGCAAAATGATGTCCAGATCCACC
CACAGCCAGAAGCCACAAACCCTCAGTCAGTGGCCCACTTTATCAACCTTACCACACTGGTAAACTCCAT
CACACCCTTGGGGAACCAACTCAGTGAGCAGCACCCACTCACCTGGCGAGCAGTGCCCCAGACAGATGTG
CTGCAGCCGCCACAGGCCCCTGCAGCCCCGCAGCAGGCGGTGCAACCCCAGGTACAGAATGAGCAGCAGC
AGATGTACAGCTACTGA

Translation (1148 aa):
MAEDGSEEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSSLPSNLEIRRLDDGAEGVFAVTQLV
KRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPALEPGHQNLTAYQHGSDV
YFTTSKDIPAGTELRVWYAAFYAKKMDKPMLKQACSSVQAAGTPEPSVSVEPERGQWVCKVCSNTFLELQ
LLNEHLLGHLEQAKSLPAGGQQHEAASEKEPDAPRMEPPTAAESKSIQSVMVTKEPKKKPRRGRKPKASK
VEQPLVIIKDKEPSEHVAEIITEIPPDEPVSATPDERIMELVLGKLAAPTNEASSVPKFPHHPSSTIALK
RGLVLSSRHGVRRKLVRQLGEHKRIHQCGTCSKVFQNSSNLSRHVRSHGECAHGDKLFKCEECSKLFSRK
ESLKQHVSYKHSRNEVDGEYRYRCGSCGKTFRMESALEFHNCRTDDKTFQCEMCFRFFSTNSNLSKHKKK
HGDKKFACEVCSKMFYRKDVMLDHQRRHLDGVRRVKREDLEASGESLVRYKKEPSGCPVCGKVFSCRSNM
NKHLLTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESADS
EPHKYSCKRCQLTFGRGKEYLKHIMEVHKEKGHGCSICHRRFALKATYHAHMVIHRENLPDPNVQKYIHP
CEICGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVHDNIREYLCAECGKGMKTKHAL
RHHMKLHKGIKEYECKECHRKFAQKVNMLKHYKRHTGIKDFMCELCGKTFSERNTMETHKLIHTVGKQWT
CSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKVSTRASMSRHMRRKHPEVLAVRIDDLDHLPETTT
IDASSIGIVQPALGLEQEELAEGKHGKAAKRSHKRKQKPEEEAGAPVPEDTTFSEYPEKEPEFTGSVGDE
TNSAVQSIQQVVVTLGDPNVTAPSSSVGLTNITVTPITTAAGTQFTNLQPVAVGHLTNPDRQLQLDNSIL
TVTFDTVSGSAMLHNRQNDVQIHPQPEATNPQSVAHFINLTTLVNSITPLGNQLSEQHPLTWRAVPQTDV
LQPPQAPAAPQQAVQPQVQNEQQQMYSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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