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Report for CCDS28385.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28385.2 Public Mus musculus 17 1700010I14Rik 23 108 98 CCDS HistoryNCBI Gene:66931Re-query CCDS DB by CCDS ID:28385.2Re-query CCDS DB by GeneID:66931See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28385.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28385.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151609.1 ENSMUSP00000118841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151609.1Link to Ensembl Protein Viewer:ENSMUSP00000118841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151609Re-query CCDS DB by Protein ID:ENSMUSP00000118841
Original member Current member NCBI NM_025851.3 NP_080127.2 Accepted alive Link to Nucleotide Sequence:NM_025851.3Link to Protein Sequence:NP_080127.2Re-query CCDS DB by Nucleotide ID:NM_025851Re-query CCDS DB by Protein ID:NP_080127Link to BLAST:NP_080127.2

Chromosomal Locations for CCDS 28385.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8988397 8988421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8992046 8992752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8993596 8993718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8995198 8995257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8996979 8997103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9001128 9001186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9001770 9001945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9005192 9005245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9005693 9005754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9007897 9007987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCTGAGGATCAGGAACCTGACTTTTACCTAAAGTGGAAGCACTGTGAGAAACCGGGTGTTAAGACTC
TAAGCAACTTAAGGAAACTCCTGTCCCAACTCCAGGAGGACCACAGGAAGGACATCAGTGTGTACATTTC
AGGACACCTGAACCCCAGGAAGCTCTACAAGCCACCTGAGACCATTTTCCAGCACTGGCGCAATTCCAAC
AGGACATGGGAGAAACCCACCCACTCCACACCCACCATCCCCCCGGCCTCCAGAAACAAAGAAGTATCAG
AGATGAAGGACGCTTGGGTTCACTTTACAGTGAGCACAGCCCTGCATCCCGATGACACACACAACACGCC
ACTGTTCAGGTACCTGAACCCACGCGTACAGGCCTCCCGTGCTCTCAAAGATGGTGCCTCCGCGGCTCTG
CAGGAGGAGGAGAAGGAACTGAAGGAAAGACTTGCATTTTCTCGGGAAAAACACATGAAGGAAGAACTCA
GGCTGCCTGAGATGAAAGTGCTCAGATACCCAGAGGTGGTATCCAGCCGCCAGTGCTCCAGGTCTGCCCC
AGGCAGGGATGTGTACCGTTACATCAGCCCCTACCTAGCTGGTATAACGAAAGCCGACAGCTACAAGAAG
TTCCTGAGTTTCCAAAGAGAAGTGCTGGCAAAGGAAGAAACCCTGAAGTATGACTTCACGGGGAGCAAGG
TGGCTGTGGCCCATGAGAACAGACTGAAGGAGGAGCTCCAGAAGATATGCACCTGCAACCCTCAGCAGTT
CAACAGGTTGCAGGTCTTTGGGGAAATCTTTGAGGATATTTGCAACAGCTCTTTGATCTTTGGGGATCTA
CTGAAAGAGATTAAGGATGAATATGAACTCTACATGGCAGCTCTCCTGGACTCACAGCCCACAGCGCAGT
ATCAGCGGCTCTTGGCTGAAGTCAGGGGGTTGGAGAACAGCCCCAGGCCCAGCTGTGACATTGACCAAGC
CAAGGAGCACCTGAGGAAGGTCCAGCAGGCTTATCTAGAAGCCTTGGAGCACAACGACAAACTCAGGAAT
GAGCTGGAGGCTGAGAGCTTATTGCTGCAGTCTGCTAAGGAAAAAGCAGCTAATGGGAAAATGAAGGATG
AGAAGGAACTGACTCTGGTCGAAAAGGTGGAGAAGAGGAGGTGTGAAATCTTTGAGAAATTGGATGAGAT
TAAAGCGCTTGAGAAACACATCAAAGAAAACATGGTGCACTCGGGAGTATTTAAGATCGCAGAGAGTGGC
CTTAAAAGCATAGAGGATGAAGCCATAAAGTTGGAAACATCAAACAGAATCTTAAAGAAGAAAATAAAAG
TGATTGAAAGCCAGATGAAGCAGCTCTTACTAAGGAGTAAGATCAGCGAGGAGGAAAGGCAGGCGCTGTG
GGATCTCATTAGGGAATATTCAGATATCGAGGATGTCGAGGATGTGGAGGGTGACTTTGAAATGCTTAGA
AAACTGACATAG

Translation (493 aa):
MAEDQEPDFYLKWKHCEKPGVKTLSNLRKLLSQLQEDHRKDISVYISGHLNPRKLYKPPETIFQHWRNSN
RTWEKPTHSTPTIPPASRNKEVSEMKDAWVHFTVSTALHPDDTHNTPLFRYLNPRVQASRALKDGASAAL
QEEEKELKERLAFSREKHMKEELRLPEMKVLRYPEVVSSRQCSRSAPGRDVYRYISPYLAGITKADSYKK
FLSFQREVLAKEETLKYDFTGSKVAVAHENRLKEELQKICTCNPQQFNRLQVFGEIFEDICNSSLIFGDL
LKEIKDEYELYMAALLDSQPTAQYQRLLAEVRGLENSPRPSCDIDQAKEHLRKVQQAYLEALEHNDKLRN
ELEAESLLLQSAKEKAANGKMKDEKELTLVEKVEKRRCEIFEKLDEIKALEKHIKENMVHSGVFKIAESG
LKSIEDEAIKLETSNRILKKKIKVIESQMKQLLLRSKISEEERQALWDLIREYSDIEDVEDVEGDFEMLR
KLT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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