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Report for CCDS50003.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
50003.1 |
Public |
Mus musculus |
17 |
Vmn2r112 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:628185](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:50003.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:628185](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 50003.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000097381.4 |
ENSMUSP00000094994.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000097381.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000094994.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000097381](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000094994](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001104575.1 |
NP_001098045.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001104575.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001098045.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001104575](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001098045](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001098045.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 50003.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2574 nt): ATGTTCACCTTGATTTTCCTCTTCTTGCTACTGAACATTCCACTTCATGTGGCTGATTTTATTCATCCCA GATGCTTTTGGAAAATGAAGCGGAATGAAAACAAGGATAGAAACCAGGGAACAGAATGTACCTTCGTGAT TCAAGCAGTACAACAACCTGTGGAGAAAGAGTATTTTAGTCATATATTGAATATACAAACTCAGACTGAA AATCGCAAATATGCTCTGGCTTTGGCTTTTTCCATAAATGAAATCAACAGGAACCCTGATCTTTTACCAA ATATGTCTCTAATATTTAAATTCTCAGCAGAAAATTGTGTCTGGGAAAATAAATTAATGAGTCTTATGCA TTCGAGTTTACAAAATTATGATATTCTCCCTAATTATTTGTGTGAAGAATACACCGAATGTGTAATGGCC CTTACAAGCCTAAATTGGGCAACAACTGTGACACTTTATACAATCCTGAATAACTTCATGTCTGAGCAGT TCCTTCAGATTACTTATGGACCCTTTCATCCTGTCCTGAGTGATCATGAAAAATTTCCCTATCTACATCA GATGGCCTCTGATCATACATCTCTAGCCCTTGCCCTGGTATCCTTCATAATTCATTTTGGTTGGAACTGG GTAGGGTTGGTCATCTCAGACAGTGATCAAGGTATCCAATTTCTCTCCTATTTGAGAAGAGAGATGGAAA AATATACAGTGTGCTTTGCCTTTGTCAACATGATTCCAGTCAACATGAATTTATATATGTCAAGAGCTGA AGTGTATTACAACCAAATCATGACATCATCCACAAATGTTGTCATCATTTATGGTGACACCGACAGTACA TTAGCTGTGAGCTTTAGAATGTGGGAATCCCTAGGTATACAGAGACTATGGATCACCACCTCACAGTGGG ATGTCAGTCCTAGTATGAAAGACTTTACATTTGGTAACAAATATGGGACTTTTGATTTTCAACAACACAA TAGTGAGATTTCTGGTTTTAAAAATTTTGTGCAGACATTGAACTCAGTCAAATGCCCAGATGAATATCTG GTAGAGCTGGAATGGATGCACTTTAACTGTGAGGTCTCAGCATCTAAATGTAAGCCACTGAAGAACTGCT CATCCAGTTACTCATTTGATTGGTTAATGGAACATACTTTTGACATGGCGTTTATTGAAAAGAGTTATTA CATATACAATGCTGTGTATGCTTTTGCCCATGCACTCCATCAGTTTACTTTTCAAAAGTTTGATAATCTG CCCAAGGACAATGGGAAAAAACACAATTATAGCTGCAAGAAGGTGGATTCCTCTCTGAGAAAGACACAGT TCACTAATCCTGTTGGGGACATAGTGAATATGAACCAAAAAGGCGAACTGCAGGAAGAGTATGACATTTT CTACATTTGGAATTTCCCACAGGGCCTTGGACTTAGAATTAAAATAGGGATGTTTAGTCCCTATTTTCCA AATGGTCAACAGGTACATTTATCTGAAGTTATGATAAGGTGGGCAAAAGGAAGTACACAGGTGCCAACTT CTGTGTGCAGTGCTGATTGTGGTCCTGGATCTAGAAAATTCGAGATGGATGGAATGGCAGCATGCTGCTT TCATTGCAAACCATGCCCAGAAAATGAAATTTCTAATGAGACAAATGTAGATAATTGTGTCCAGTGTCCA GAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAAGCTGTTGTATTTCTCAGCTATGAAG AACCACTGGGGATGGCACTTTCCTTACTCTCCTTGTTCTTCTCTGCATTCACAACTGTGATTCTCGGGGT CATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGACTCTCACCTACATCTTGCTAATC TCACTCATTTTTTGTTTCCTCTGCCCTTTGCTTTTCATTGGCCATCCAAACTCAGTTACATGCTTTCTAC AACAAATCACATTTGGAGTTGTATTCACTGTTGCTCTGTCCACTGTCTTGGCTAAAACAATTACTGTAGT TCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAGTATTTTCTAGTTTCAGGGGCATCTAACTAC ATCATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTTTG TTGATATTGATGCACAATCTGAACATGGCCACATCATCATTGTTTGCCACAAGGGTTCAGTCAATGCATT TTACTCTATTCTGGGATACTTGGCTCTCCTGTCCTTTGGGAGCTTCACTCTGGCTTTCCTTTCCAGAAAC CTTCCTGGTGCCTTTAATGAAGCCAAATCCATAACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGGTCA CTTTCATCCCTGTTTACCACAGCACCAAAGGCAAGGTCATGGTGGCTGTGGAGATCTTCTCCACTTTGGC TTCCAGTGCAGGGATCTTGGGATGCATCTTTGTTTCTAAATGTTACACAATATTGTTTAGACCAGACCGA AATTCTGTTGAAATGACCAGGGTGAAATCATCTTTCCATGCTCATATTTCATAA
Translation (857 aa): MFTLIFLFLLLNIPLHVADFIHPRCFWKMKRNENKDRNQGTECTFVIQAVQQPVEKEYFSHILNIQTQTE NRKYALALAFSINEINRNPDLLPNMSLIFKFSAENCVWENKLMSLMHSSLQNYDILPNYLCEEYTECVMA LTSLNWATTVTLYTILNNFMSEQFLQITYGPFHPVLSDHEKFPYLHQMASDHTSLALALVSFIIHFGWNW VGLVISDSDQGIQFLSYLRREMEKYTVCFAFVNMIPVNMNLYMSRAEVYYNQIMTSSTNVVIIYGDTDST LAVSFRMWESLGIQRLWITTSQWDVSPSMKDFTFGNKYGTFDFQQHNSEISGFKNFVQTLNSVKCPDEYL VELEWMHFNCEVSASKCKPLKNCSSSYSFDWLMEHTFDMAFIEKSYYIYNAVYAFAHALHQFTFQKFDNL PKDNGKKHNYSCKKVDSSLRKTQFTNPVGDIVNMNQKGELQEEYDIFYIWNFPQGLGLRIKIGMFSPYFP NGQQVHLSEVMIRWAKGSTQVPTSVCSADCGPGSRKFEMDGMAACCFHCKPCPENEISNETNVDNCVQCP EDQYANTEQNHCIHKAVVFLSYEEPLGMALSLLSLFFSAFTTVILGVIVKHHNTPIVKANNRTLTYILLI SLIFCFLCPLLFIGHPNSVTCFLQQITFGVVFTVALSTVLAKTITVVLAFKITASQRMMKYFLVSGASNY IILICTLIQVIVCAVWLGASPPFVDIDAQSEHGHIIIVCHKGSVNAFYSILGYLALLSFGSFTLAFLSRN LPGAFNEAKSITFSMLVFCSVWVTFIPVYHSTKGKVMVAVEIFSTLASSAGILGCIFVSKCYTILFRPDR NSVEMTRVKSSFHAHIS
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